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SLC7A1
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SLC7A1
INTERACTION INTERACTION METABOLIC PATHWAYS Show tissue menu
TRANSPORT REACTIONS
Protein interactions
Protein interactions
Methods
Human metabolism
Metabolic proteins
Methods
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SLC7A1
Synonyms ATRC1, CAT-1, ERR, HCAT1, REC1L
Gene descriptioni

Full gene name according to HGNC.

Solute carrier family 7 member 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Read more
Metabolic proteins
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)

HUMAN PROTEIN ATLAS INFORMATIONi

Summary of RNA expression analysis and annotation data generated within the Human Protein Atlas project.

Single cell type
expression clusteri

The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Brain endothelial cells - Blood brain barrier (mainly)
Single cell type specificityi

The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected.

Cell type enhanced (Basal keratinocytes, Endometrial glandular cells, Epididymal basal cells, Esophageal basal cells, Salivary myoepithelial cells)
Tissue expression
cluster (RNA)i

The RNA data was used to cluster genes according to their expression across tissues. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Esophagus - Basic cellular processes (mainly)
Tissue specificity (RNA)i

The RNA specificity category is based on mRNA expression levels in the consensus dataset which is calculated from the RNA expression levels in samples from HPA and GTEX. The categories include: tissue enriched, group enriched, tissue enhanced, low tissue specificity and not detected.

Tissue enhanced (Esophagus)
Subcellular locationi

Main subcellular location based on data generated in the subcellular section of the Human Protein Atlas.

Not available
Secretome annotationi

All genes with at least one predicted secreted isoform have been annotated and classified with the aim to determine if the corresponding protein(s) are:

  • secreted into blood
  • locally secreted
  • or actually being attached to membrane or retained in intracellular locations like mitochondria, endoplasmatic reticulum (ER), Golgi apparatus or lysosomes.
Not available
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 13
Cytoband q12.3
Chromosome location (bp) 29509414 - 29595688
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

2
Ensembl ENSG00000139514 (version 109)
Entrez gene 6541
HGNC HGNC:11057
UniProt P30825
GeneCards SLC7A1
ASSAYSi

Links to data of the different assays available in the Structure & Interaction resource of the Human Protein Atlas. Click on the miniature images to directly get to the respective section.

Interaction Metabolic
INTERACTIONi

In the Interaction part of this page network plots showing the gene's first-level interaction partners according to four different datasets are displayed, including a consensus network plot showing only interactions present in at least two of the datasets. By clicking on nodes the network can be expanded. In the network plots the nodes represent genes and edge color represent the number of datasets the interaction belongs to. In-house generated AlphaFold 3 predicted 3D structures for interactions in the consensus network are displayed by clicking on the blue symbols on the edges.

The highlight bar in the top of the plot can be used to color the nodes according to subcellular location (based on data in the Subcellular section), predicted location (based on signalpeptide and transmembrane region predictions), tissue specificity (based on RNA tissue expression profiles) or proteinclass. For genes categorised as single cell type or group specific the option to highlight interaction partners expressed in the same cell type will also be available in the highlight bar.

Custom highlighting of nodes is possible using the top left Filter option in which a query of choice can be built to for example label all nodes that are tissue enriched in both human and mouse brain or those that belongs to a certain tissue expression cluster. The expression cluster for the gene is stated in the box Human Protein Atlas Information above the network plot. Click on Filter in the top left in the plot to find the query builder and some example queries.

Interactions included are direct interaction and physical associations with high and medium confidence from IntAct, physical multivalidated interactions from BioGRID, interactions with>75% probability from BioPlex and significant physical interactions from OpenCell.

Filter menu »
Fields »
e.g. Brain enriched, Localized to mitochondria, Esophagus - Basic cellular processes

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


Consensus
IntAct
BioGrid
OpenCell
BioPlex
Highlight:
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Subcell location
Predicted location
Cell type specificity
Protein class

Non-commercial use only, subject to AlphaFold3 Output Terms of Use

Interaction:
Color scheme:
Confidence
Antibodies
Interactor
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PAE plot
Number of interactions: 5
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
COMT353510
SACM1L926152023
STIM162129413
TSPAN152430122
YIPF4228300
Highlight:
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Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 47 View all protein interaction data in IntAct
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ADGRB303200
APOA2215604
AQP60264000
ATP6V0C94711941
C8A06001
CBLIF05000
CCL4016000
CCL4L2031000
CD4041819035
CD79A01444018
CDIPT047122
CERS4040005
CMTM2010000
COMT353510
CREB3L14163500
EMC6416606
FATE1178100
GALNT15013000
GET1127121
GLB117720
GPR1520164000
HERPUD2015010
LEPROT011000
LEPROTL1068000
MGST31797020
MS4A13052000
ORMDL3124100
PDCD1LG2018003
PNLIPRP1031000
PTPN9139300
RNF144A111806
SACM1L926152023
SCN3B3944027
SEC23A102519111
SLC10A60124000
SLC18A208200
SLC30A2256600
SLC39A2045000
SLC39A9030800
SLC52A108000
SMCO4051000
STIM162129413
TMBIM62564012
TMEM14A021000
TMEM19034000
TSPO2049000
YIPF4228300
Show allShow less
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 43
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ACP2244514
AGPAT3016400
AGPAT4022204
ALG11011020
BCL2L13243600
CERS623439
COMT353510
CYB5R106504
FAM241B012030
FITM202103
FKRP01300
GHITM287040
GNPAT00503
GOLM1145600
GPR89A00600
GPRC5C10310
HS2ST100470
KRAS115414160
LEMD201515
LNPK011670
MAVS16257202
METTL7A17423
MFF111010
MGAT5004012
MTCH2017505
NAT1402204
NSF137263917
RAB4A12118887
RAC3451040
RHOB3230811
SACM1L926152023
SGPP100205
STIM162129413
STX121933364118
STX420373166
SYNGR2124013
TMEM11240331
TMEM186041017
TMEM26800100
TSPAN152430122
YIPF4228300
YIPF6472509
ZDHHC900300
Show allShow less
SLC7A1 has no defined protein interactions in OpenCell.
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 17
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ACKR2070044
CA14000025
CD27254031
CD70021081
GPR1821110243
GPR450000197
GPR55000048
LGALS97024033
LGALS9C023005
MFSD4A90130146
MGARP11420115
PTAFR224018
SLC2A16020262
TMEM184A000048
TPST2002042
TSPAN152430122
VIPR10000118
Show allShow less
METABOLIC SUMMARYi

In this summary the pathway/subsystems to which the gene belongs is shown together with the associated cellular compartment for the reactions based on metabolite information. The number of proteins and metabolites in the pathway is shown as well as the number of reactions for the selected gene. By clicking on a pathway in the summary table the associated metabolic network map is shown, together with a gene-tissue heatmap that shows the expression of genes in that pathway in different tissues.

Gene SLC7A1 is associated with 24 reactions in 1 different subsystems, and present in the compartments: Cytosol, Extracellular. Provided by metabolicatlas.org
Pathway / Subsystem Subsystem-associated compartments # proteins # metabolites # reactions for
this protein
Transport reactions Cytosol, Extracellular, Lysosome, Peroxisome, Mitochondria, Golgi apparatus, Endoplasmic reticulum, Nucleus, Inner mitochondria 563 1599 24
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.

Splice variant SwissProt TrEMBL Protein class Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SLC7A1-201 P30825
A0A024RDQ9
Metabolic proteins
Transporters
Predicted membrane proteins
Mapped to neXtProt
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
629 aa
67.6 kDa
No >9
SLC7A1-202 Q5JR49
Metabolic proteins
Predicted membrane proteins
Protein evidence (Ezkurdia et al 2014)
121 aa
12.9 kDa
No 3

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by the Knut & Alice Wallenberg Foundation.

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