A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.6
nTPM
Monaco:
65.6
nTPM
Schmiedel:
167.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.6
HPA sample
nTPM
Memory B-cell nTPM: 3.7
Samples: 6
Max nTPM: 6.7
Min nTPM: 2.5
P10809_1017
2.6
P10809_1025
2.5
P10809_1044
2.8
P10809_1063
2.9
P10809_1092
6.7
P10809_1105
4.9
Naive B-cell nTPM: 5.6
Samples: 6
Max nTPM: 10.3
Min nTPM: 3.8
P10809_1011
4.1
P10809_1029
4.7
P10809_1048
6.0
P10809_1067
10.3
P10809_1091
3.8
P10809_1104
4.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
65.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 46.8
Samples: 4
Max nTPM: 58.4
Min nTPM: 38.0
RHH5310_R3677
40.9
RHH5218_R3590
49.7
RHH5247_R3619
38.0
RHH5276_R3648
58.4
Naive B-cell nTPM: 62.6
Samples: 4
Max nTPM: 83.6
Min nTPM: 47.9
RHH5308_R3675
55.0
RHH5216_R3588
47.9
RHH5245_R3617
63.7
RHH5274_R3646
83.6
Non-switched memory B-cell nTPM: 62.6
Samples: 4
Max nTPM: 83.1
Min nTPM: 50.7
RHH5309_R3676
56.6
RHH5217_R3589
60.0
RHH5246_R3618
50.7
RHH5275_R3647
83.1
Plasmablast nTPM: 59.4
Samples: 4
Max nTPM: 66.4
Min nTPM: 52.1
RHH5312_R3679
61.9
RHH5220_R3592
52.1
RHH5249_R3621
57.2
RHH5278_R3650
66.4
Switched memory B-cell nTPM: 65.6
Samples: 4
Max nTPM: 82.8
Min nTPM: 53.4
RHH5311_R3678
61.4
RHH5219_R3591
53.4
RHH5248_R3620
64.8
RHH5277_R3649
82.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
167.5
Schmiedel sample id
TPM
Naive B-cell TPM: 167.5
Samples: 91
Max TPM: 304.2
Min TPM: 111.2
B_CELL_NAIVE_1
304.2
B_CELL_NAIVE_2
246.5
B_CELL_NAIVE_3
233.8
B_CELL_NAIVE_4
233.1
B_CELL_NAIVE_5
230.6
B_CELL_NAIVE_6
227.4
B_CELL_NAIVE_7
224.3
B_CELL_NAIVE_8
219.4
B_CELL_NAIVE_9
213.6
B_CELL_NAIVE_10
212.3
B_CELL_NAIVE_11
211.5
B_CELL_NAIVE_12
203.4
B_CELL_NAIVE_13
201.2
B_CELL_NAIVE_14
199.0
B_CELL_NAIVE_15
196.9
B_CELL_NAIVE_16
196.1
B_CELL_NAIVE_17
191.7
B_CELL_NAIVE_18
190.7
B_CELL_NAIVE_19
189.6
B_CELL_NAIVE_20
186.9
B_CELL_NAIVE_21
186.8
B_CELL_NAIVE_22
181.5
B_CELL_NAIVE_23
178.2
B_CELL_NAIVE_24
177.6
B_CELL_NAIVE_25
177.1
B_CELL_NAIVE_26
176.4
B_CELL_NAIVE_27
175.5
B_CELL_NAIVE_28
173.7
B_CELL_NAIVE_29
173.4
B_CELL_NAIVE_30
172.6
B_CELL_NAIVE_31
171.1
B_CELL_NAIVE_32
170.7
B_CELL_NAIVE_33
170.6
B_CELL_NAIVE_34
170.3
B_CELL_NAIVE_35
170.2
B_CELL_NAIVE_36
169.5
B_CELL_NAIVE_37
168.8
B_CELL_NAIVE_38
168.7
B_CELL_NAIVE_39
168.3
B_CELL_NAIVE_40
167.8
B_CELL_NAIVE_41
166.6
B_CELL_NAIVE_42
166.5
B_CELL_NAIVE_43
165.5
B_CELL_NAIVE_44
163.9
B_CELL_NAIVE_45
162.9
B_CELL_NAIVE_46
162.8
B_CELL_NAIVE_47
161.8
B_CELL_NAIVE_48
161.8
B_CELL_NAIVE_49
160.9
B_CELL_NAIVE_50
159.7
B_CELL_NAIVE_51
159.2
B_CELL_NAIVE_52
159.0
B_CELL_NAIVE_53
156.4
B_CELL_NAIVE_54
154.3
B_CELL_NAIVE_55
153.2
B_CELL_NAIVE_56
153.1
B_CELL_NAIVE_57
150.8
B_CELL_NAIVE_58
150.6
B_CELL_NAIVE_59
150.4
B_CELL_NAIVE_60
149.0
B_CELL_NAIVE_61
148.2
B_CELL_NAIVE_62
147.8
B_CELL_NAIVE_63
147.2
B_CELL_NAIVE_64
146.3
B_CELL_NAIVE_65
144.8
B_CELL_NAIVE_66
144.8
B_CELL_NAIVE_67
144.8
B_CELL_NAIVE_68
144.7
B_CELL_NAIVE_69
144.0
B_CELL_NAIVE_70
143.2
B_CELL_NAIVE_71
142.7
B_CELL_NAIVE_72
142.4
B_CELL_NAIVE_73
142.3
B_CELL_NAIVE_74
141.3
B_CELL_NAIVE_75
141.3
B_CELL_NAIVE_76
141.0
B_CELL_NAIVE_77
140.5
B_CELL_NAIVE_78
140.5
B_CELL_NAIVE_79
139.8
B_CELL_NAIVE_80
139.2
B_CELL_NAIVE_81
138.8
B_CELL_NAIVE_82
138.3
B_CELL_NAIVE_83
137.4
B_CELL_NAIVE_84
135.9
B_CELL_NAIVE_85
134.5
B_CELL_NAIVE_86
132.9
B_CELL_NAIVE_87
128.1
B_CELL_NAIVE_88
127.6
B_CELL_NAIVE_89
120.3
B_CELL_NAIVE_90
117.5
B_CELL_NAIVE_91
111.2
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