A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.0
nTPM
Monaco:
32.7
nTPM
Schmiedel:
61.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.0
HPA sample
nTPM
Classical monocyte nTPM: 1.4
Samples: 6
Max nTPM: 2.2
Min nTPM: 1.0
P10809_1003
1.0
P10809_1020
1.1
P10809_1039
1.1
P10809_1058
2.2
P10809_1080
1.5
P10809_1107
1.6
Intermediate monocyte nTPM: 2.0
Samples: 6
Max nTPM: 2.9
Min nTPM: 1.0
P10809_1004
1.0
P10809_1023
2.6
P10809_1042
2.3
P10809_1061
2.9
P10809_1081
2.0
P10809_1108
1.3
Non-classical monocyte nTPM: 1.4
Samples: 5
Max nTPM: 2.7
Min nTPM: 0.9
P10809_1005
1.2
P10809_1053
1.4
P10809_1072
0.9
P10809_1082
2.7
P10809_1109
1.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.7
Monaco sample
nTPM
Classical monocyte nTPM: 29.7
Samples: 4
Max nTPM: 42.4
Min nTPM: 16.9
RHH5313_R3680
30.6
RHH5221_R3593
16.9
RHH5250_R3622
28.7
RHH5279_R3651
42.4
Intermediate monocyte nTPM: 32.7
Samples: 4
Max nTPM: 38.2
Min nTPM: 28.5
RHH5314_R3681
28.5
RHH5222_R3594
30.6
RHH5251_R3623
38.2
RHH5280_R3652
33.4
Non-classical monocyte nTPM: 25.4
Samples: 4
Max nTPM: 33.6
Min nTPM: 18.3
RHH5315_R3682
25.0
RHH5223_R3595
18.3
RHH5252_R3624
33.6
RHH5281_R3653
24.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.3
Schmiedel sample id
TPM
Classical monocyte TPM: 38.0
Samples: 91
Max TPM: 49.5
Min TPM: 27.0
MONOCYTES_1
49.5
MONOCYTES_2
48.6
MONOCYTES_3
48.0
MONOCYTES_4
47.4
MONOCYTES_5
47.0
MONOCYTES_6
46.0
MONOCYTES_7
45.6
MONOCYTES_8
45.5
MONOCYTES_9
45.3
MONOCYTES_10
44.1
MONOCYTES_11
44.0
MONOCYTES_12
44.0
MONOCYTES_13
43.8
MONOCYTES_14
43.7
MONOCYTES_15
43.5
MONOCYTES_16
43.1
MONOCYTES_17
43.0
MONOCYTES_18
41.4
MONOCYTES_19
41.2
MONOCYTES_20
41.1
MONOCYTES_21
40.9
MONOCYTES_22
40.9
MONOCYTES_23
40.6
MONOCYTES_24
40.5
MONOCYTES_25
40.5
MONOCYTES_26
40.5
MONOCYTES_27
40.3
MONOCYTES_28
40.2
MONOCYTES_29
40.1
MONOCYTES_30
39.9
MONOCYTES_31
39.8
MONOCYTES_32
39.7
MONOCYTES_33
39.7
MONOCYTES_34
39.6
MONOCYTES_35
39.6
MONOCYTES_36
39.3
MONOCYTES_37
39.3
MONOCYTES_38
39.0
MONOCYTES_39
38.9
MONOCYTES_40
38.8
MONOCYTES_41
38.8
MONOCYTES_42
38.4
MONOCYTES_43
38.4
MONOCYTES_44
38.3
MONOCYTES_45
38.3
MONOCYTES_46
38.2
MONOCYTES_47
38.1
MONOCYTES_48
37.9
MONOCYTES_49
37.8
MONOCYTES_50
37.5
MONOCYTES_51
37.3
MONOCYTES_52
37.2
MONOCYTES_53
37.1
MONOCYTES_54
36.9
MONOCYTES_55
36.8
MONOCYTES_56
36.6
MONOCYTES_57
36.6
MONOCYTES_58
36.6
MONOCYTES_59
36.0
MONOCYTES_60
36.0
MONOCYTES_61
35.7
MONOCYTES_62
35.6
MONOCYTES_63
35.5
MONOCYTES_64
35.4
MONOCYTES_65
35.4
MONOCYTES_66
35.3
MONOCYTES_67
34.9
MONOCYTES_68
34.9
MONOCYTES_69
34.7
MONOCYTES_70
34.5
MONOCYTES_71
34.4
MONOCYTES_72
34.2
MONOCYTES_73
34.2
MONOCYTES_74
34.2
MONOCYTES_75
33.5
MONOCYTES_76
33.5
MONOCYTES_77
33.1
MONOCYTES_78
32.7
MONOCYTES_79
32.4
MONOCYTES_80
32.3
MONOCYTES_81
31.7
MONOCYTES_82
31.0
MONOCYTES_83
30.9
MONOCYTES_84
30.7
MONOCYTES_85
30.4
MONOCYTES_86
30.3
MONOCYTES_87
30.2
MONOCYTES_88
30.0
MONOCYTES_89
28.4
MONOCYTES_90
27.8
MONOCYTES_91
27.0
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Non-classical monocyte TPM: 61.3
Samples: 90
Max TPM: 87.7
Min TPM: 33.8
M2_1
87.7
M2_2
86.4
M2_3
84.0
M2_4
82.8
M2_5
79.3
M2_6
78.4
M2_7
77.7
M2_8
77.0
M2_9
76.0
M2_10
75.0
M2_11
74.4
M2_12
74.1
M2_13
71.6
M2_14
71.5
M2_15
71.5
M2_16
71.3
M2_17
71.2
M2_18
70.9
M2_19
70.5
M2_20
70.0
M2_21
69.6
M2_22
69.0
M2_23
68.1
M2_24
68.0
M2_25
67.5
M2_26
67.3
M2_27
66.6
M2_28
64.8
M2_29
64.7
M2_30
64.6
M2_31
64.2
M2_32
63.8
M2_33
63.4
M2_34
63.2
M2_35
63.1
M2_36
62.6
M2_37
62.6
M2_38
62.3
M2_39
62.2
M2_40
61.3
M2_41
61.1
M2_42
60.1
M2_43
59.7
M2_44
59.2
M2_45
59.2
M2_46
59.1
M2_47
59.1
M2_48
58.9
M2_49
58.9
M2_50
58.6
M2_51
58.5
M2_52
58.2
M2_53
58.1
M2_54
58.0
M2_55
57.5
M2_56
57.3
M2_57
56.9
M2_58
56.3
M2_59
55.9
M2_60
55.8
M2_61
55.8
M2_62
55.6
M2_63
55.4
M2_64
54.9
M2_65
54.8
M2_66
54.7
M2_67
54.6
M2_68
54.2
M2_69
54.1
M2_70
53.0
M2_71
52.6
M2_72
52.1
M2_73
52.1
M2_74
52.0
M2_75
51.9
M2_76
51.6
M2_77
51.0
M2_78
51.0
M2_79
51.0
M2_80
50.7
M2_81
50.1
M2_82
49.9
M2_83
49.8
M2_84
49.4
M2_85
49.2
M2_86
46.7
M2_87
46.6
M2_88
45.5
M2_89
42.3
M2_90
33.8
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