A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.3
nTPM
Monaco:
35.5
nTPM
Schmiedel:
69.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.3
HPA sample
nTPM
NK-cell nTPM: 2.4
Samples: 6
Max nTPM: 4.7
Min nTPM: 0.1
P10809_1013
4.7
P10809_1033
1.1
P10809_1052
0.4
P10809_1071
4.7
P10809_1093
0.1
P10809_1103
3.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.5
Monaco sample
nTPM
NK-cell nTPM: 35.5
Samples: 4
Max nTPM: 45.0
Min nTPM: 27.7
RHH5316_R3683
32.5
RHH5224_R3596
27.7
RHH5253_R3625
36.6
RHH5282_R3654
45.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
69.0
Schmiedel sample id
TPM
NK-cell TPM: 69.0
Samples: 90
Max TPM: 110.6
Min TPM: 45.5
NK_1
110.6
NK_2
108.0
NK_3
104.3
NK_4
103.5
NK_5
101.4
NK_6
94.5
NK_7
94.4
NK_8
91.5
NK_9
91.4
NK_10
90.9
NK_11
89.2
NK_12
86.5
NK_13
84.6
NK_14
84.1
NK_15
83.4
NK_16
81.5
NK_17
81.2
NK_18
80.8
NK_19
80.6
NK_20
76.6
NK_21
76.1
NK_22
75.9
NK_23
75.8
NK_24
75.6
NK_25
75.4
NK_26
74.5
NK_27
73.5
NK_28
73.3
NK_29
72.4
NK_30
72.2
NK_31
71.7
NK_32
70.9
NK_33
70.9
NK_34
70.4
NK_35
70.2
NK_36
70.2
NK_37
70.1
NK_38
69.9
NK_39
69.8
NK_40
69.6
NK_41
68.3
NK_42
68.1
NK_43
67.9
NK_44
66.2
NK_45
66.0
NK_46
65.3
NK_47
64.8
NK_48
64.7
NK_49
63.8
NK_50
62.9
NK_51
62.7
NK_52
62.4
NK_53
62.4
NK_54
62.4
NK_55
62.0
NK_56
61.9
NK_57
61.7
NK_58
61.5
NK_59
61.1
NK_60
60.9
NK_61
60.8
NK_62
60.7
NK_63
60.4
NK_64
60.3
NK_65
60.2
NK_66
59.7
NK_67
59.5
NK_68
59.1
NK_69
58.5
NK_70
58.3
NK_71
58.1
NK_72
57.4
NK_73
57.1
NK_74
56.6
NK_75
56.0
NK_76
56.0
NK_77
55.9
NK_78
55.7
NK_79
55.3
NK_80
54.4
NK_81
54.1
NK_82
54.0
NK_83
52.8
NK_84
52.0
NK_85
51.6
NK_86
50.7
NK_87
50.0
NK_88
49.6
NK_89
47.8
NK_90
45.5
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