MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:80.6 nTPM
HPA Brain:219.2 nTPM
GTEx:80.6 nTPM
FANTOM5:218.9 Scaled Tags Per Million
Pig:167.7 nTPM
Mouse:620.1 nTPM
Allen mouse:23.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 219.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 150.0
1827 Male, age 72, unknown 192.4
2586 Male, age 75, left hemisphere 184.3
2666 Male, age 74, left hemisphere 175.9
2411 Female, age 72, unknown 166.3
1870 Female, age 42, unknown 158.9
2219 Male, age 76, both hemispheres 148.1
1833 Male, age 53, unknown 131.9
2828 Female, age 72, unknown 125.4
1830 Male, age 51, unknown 116.6
2019 Male, age 18, unknown 100.3
Dorsal raphe nucleus
nTPM: 194.4
2298 Female, age 72, unknown 277.4
2047 Male, age 72, unknown 224.0
2750 Male, age 76, both hemispheres 171.6
1828 Male, age 53, unknown 167.9
2016 Female, age 72, unknown 130.9
Inferior colliculus
nTPM: 155.5
2097 Female, age 72, unknown 204.2
2849 Male, age 72, unknown 159.0
1848 Female, age 42, unknown 137.7
1890 Male, age 53, unknown 121.3
Median raphe nucleus
nTPM: 219.2
2220 Male, age 76, midline 219.2
Periaquaductal grey, anterior
nTPM: 217.8
2502 Female, age 75, unknown 250.6
1947 Male, age 18, unknown 207.7
1795 Male, age 51, unknown 195.1
Periaquaductal grey, dorsal
nTPM: 166.5
1840 Male, age 53, unknown 208.1
2850 Male, age 76, both hemispheres 171.4
1831 Male, age 72, unknown 152.6
2464 Female, age 72, unknown 133.9
Periaquaductal grey, lateral
nTPM: 168.1
2053 Male, age 18, unknown 174.7
2272 Male, age 74, both hemispheres 173.3
2140 Male, age 76, both hemispheres 156.1
Pretectal area
nTPM: 175.0
2224 Female, age 72, unknown 244.8
1816 Male, age 51, unknown 220.7
1944 Female, age 72, unknown 192.7
2825 Male, age 18, unknown 192.0
2007 Male, age 72, unknown 174.0
2273 Male, age 74, both hemispheres 166.1
1817 Female, age 42, unknown 157.5
2407 Male, age 75, both hemispheres 156.0
1815 Male, age 53, unknown 151.3
2667 Female, age 75, unknown 146.5
2316 Male, age 76, right hemisphere 123.0
Red nucleus
nTPM: 98.3
2584 Male, age 75, left hemisphere 142.3
1821 Female, age 72, unknown 124.5
2725 Female, age 75, unknown 113.8
2785 Male, age 18, unknown 103.9
2769 Male, age 72, unknown 97.1
2588 Male, age 74, left hemisphere 93.7
1954 Female, age 42, unknown 93.0
2227 Male, age 72, unknown 92.7
2503 Female, age 72, unknown 84.8
1904 Male, age 53, unknown 83.7
1865 Male, age 51, unknown 81.7
2823 Male, age 76, right hemisphere 68.8
Substantia nigra
nTPM: 149.8
1916 Female, age 42, unknown 189.7
1941 Male, age 53, unknown 189.0
1889 Female, age 72, unknown 178.2
1851 Male, age 51, unknown 172.2
2241 Male, age 72, unknown 148.9
2583 Male, age 75, right hemisphere 141.7
2699 Male, age 18, unknown 134.1
2590 Female, age 75, unknown 126.6
2665 Male, age 74, both hemispheres 115.1
2409 Female, age 72, unknown 102.0
Superior colliculus
nTPM: 153.3
2261 Male, age 18, unknown 200.8
1796 Male, age 53, unknown 189.2
2664 Male, age 75, both hemispheres 174.6
1839 Male, age 51, unknown 161.2
2087 Female, age 72, unknown 158.7
2668 Female, age 75, unknown 149.8
2587 Male, age 74, left hemisphere 143.9
1895 Male, age 76, right hemisphere 139.5
1913 Female, age 42, unknown 115.0
1995 Male, age 72, unknown 100.3
Ventral tegmental area
nTPM: 176.4
1915 Female, age 42, unknown 180.8
1942 Male, age 51, unknown 180.3
2021 Male, age 53, unknown 176.8
2223 Female, age 72, unknown 175.6
2218 Male, age 76, both hemispheres 174.7
2410 Female, age 72, unknown 170.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 80.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 80.6
Samples: 183

Max nTPM: 460.0
Min nTPM: 13.1
Std nTPM: 72.9
Median nTPM: 55.8
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 460.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 403.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 396.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 264.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 260.4
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 257.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 250.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 249.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 235.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 232.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 228.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 218.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 218.9
FF:10158-103A5 76 years, female 218.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 167.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 165.8
Samples: 4

Max nTPM: 247.6
Min nTPM: 66.6
Sample A Female 247.6
Sample B Female 120.8
Sample C Male 228.2
Sample D Male 66.6
Midbrain
nTPM: 162.6
Samples: 4

Max nTPM: 222.3
Min nTPM: 95.9
Sample A Female 95.9
Sample B Female 144.3
Sample C Male 187.7
Sample D Male 222.3
Periaqueductal gray
nTPM: 167.7
Samples: 3

Max nTPM: 208.9
Min nTPM: 136.9
Sample B Female 157.4
Sample C Male 208.9
Sample D Male 136.9
Superior colliculi
nTPM: 139.0
Samples: 4

Max nTPM: 195.4
Min nTPM: 70.4
Sample A Female 195.4
Sample B Female 70.4
Sample C Male 138.2
Sample D Male 151.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 620.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 620.1
Samples: 4

Max nTPM: 633.0
Min nTPM: 605.2
Sample A Male 618.9
Sample B Male 623.2
Sample C Female 605.2
Sample D Female 633.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 23.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 23.9
68193013 Antisense, RP_040928_01_C01, Mouse strain C57BL/6J (56 days, male) 23.9
70928293 Antisense, RP_050725_02_C08, Mouse strain C57BL/6J (56 days, male) 23.9

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