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  • TSPAN3
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:197.1 nTPM
HPA Brain:260.7 nTPM
GTEx:197.1 nTPM
FANTOM5:267.1 Scaled Tags Per Million
Pig:270.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

260.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 243.5
1981 Female, age 72, midline 309.3
2048 Male, age 55, midline 262.1
2565 Male, age 75, midline 260.9
2816 Male, age 47, midline 196.0
2194 Female, age 79, both hemispheres 189.1
Cervical spinal cord, dorsal horn
nTPM: 260.7
2173 Female, age 72, unknown 337.6
2069 Male, age 47, both hemispheres 284.2
2296 Male, age 66, both hemispheres 283.8
2721 Male, age 90, both hemispheres 256.0
1877 Male, age 55, unknown 203.4
2297 Male, age 75, both hemispheres 199.4
Cervical spinal cord, ventral horn
nTPM: 242.6
2098 Female, age 72, unknown 348.1
2809 Male, age 90, both hemispheres 276.1
2295 Male, age 66, both hemispheres 272.9
2480 Male, age 75, both hemispheres 222.1
2068 Male, age 55, unknown 177.1
2820 Female, age 79, both hemispheres 159.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

197.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 197.1
Samples: 204

Max nTPM: 447.0
Min nTPM: 108.2
Std nTPM: 50.1
Median nTPM: 189.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 447.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 340.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 338.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 329.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 316.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 315.9
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 309.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 305.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 304.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 299.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 297.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 290.4
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 284.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 280.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 280.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 274.9
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 269.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 263.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 262.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 260.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 253.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 252.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 251.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 251.8
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 251.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 251.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 249.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 249.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 248.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 248.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 245.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 244.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 242.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 241.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 240.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 239.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 238.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 237.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 235.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 235.0
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 233.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 232.7
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 231.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 230.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 230.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 230.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 230.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 229.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 228.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 227.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 227.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 226.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 226.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 225.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 225.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 225.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 221.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 221.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 221.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 218.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 218.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 214.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 212.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 210.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 209.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 209.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 208.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 207.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 207.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 206.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 204.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 204.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 204.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 203.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 203.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 202.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 202.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 201.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 200.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 199.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 199.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 199.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 199.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 197.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 197.6
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 197.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 196.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 195.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 195.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 194.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 194.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 194.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 193.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 193.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 193.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 193.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 192.8
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 192.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 192.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 192.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 192.0
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 190.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 189.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 189.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 187.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 186.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 186.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 185.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 185.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 185.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 184.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 184.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 183.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 183.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 182.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 182.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 181.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 180.9
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 180.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 180.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 180.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 179.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 179.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 179.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 178.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 178.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 178.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 176.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 175.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 175.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 175.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 174.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 173.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 173.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 172.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 172.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 172.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 172.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 171.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 171.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 171.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 170.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 169.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 166.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 166.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 166.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 165.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 165.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 165.6
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 164.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 164.5
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 164.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 162.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 162.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 161.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 161.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 159.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 159.9
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 159.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 158.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 156.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 155.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 154.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 154.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 153.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 153.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 152.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 151.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 151.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 151.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 150.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 149.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 149.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 148.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 148.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 148.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 148.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 145.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 145.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 145.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 143.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 143.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 143.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 143.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 142.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 137.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 137.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 135.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 134.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 133.0
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 132.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 131.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 130.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 129.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 128.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 127.1
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 127.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 126.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 126.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 119.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 118.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 118.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 117.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 108.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

267.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 267.1
FF:10159-103A6 76 years, female 276.0
FF:10181-103D1 60 years, female 258.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

270.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 270.1
Samples: 4

Max nTPM: 319.7
Min nTPM: 242.1
Sample A Female 242.1
Sample B Female 262.5
Sample C Male 319.7
Sample D Male 255.9
Ventral spinal cord
nTPM: 265.4
Samples: 4

Max nTPM: 280.7
Min nTPM: 248.6
Sample A Female 260.5
Sample B Female 271.8
Sample C Male 280.7
Sample D Male 248.6

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