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  • TISSUE

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  • TSPAN3
BRAIN MIDBRAIN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Midbrain
Brain methods
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:274.7 nTPM
HPA Brain:268.0 nTPM
GTEx:274.7 nTPM
FANTOM5:224.7 Scaled Tags Per Million
Pig:310.8 nTPM
Mouse:482.3 nTPM
Allen mouse:21.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

268.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 217.2
2586 Male, age 75, left hemisphere 275.8
2666 Male, age 74, left hemisphere 244.8
1827 Male, age 72, unknown 232.0
2828 Female, age 72, unknown 227.3
2411 Female, age 72, unknown 227.0
1870 Female, age 42, unknown 218.3
2019 Male, age 18, unknown 199.9
1833 Male, age 53, unknown 196.9
1830 Male, age 51, unknown 181.6
2219 Male, age 76, both hemispheres 168.2
Dorsal raphe nucleus
nTPM: 268.0
2298 Female, age 72, unknown 323.0
2016 Female, age 72, unknown 272.9
2047 Male, age 72, unknown 269.3
1828 Male, age 53, unknown 265.6
2750 Male, age 76, both hemispheres 209.4
Inferior colliculus
nTPM: 241.2
2097 Female, age 72, unknown 272.7
1890 Male, age 53, unknown 242.3
1848 Female, age 42, unknown 235.3
2849 Male, age 72, unknown 214.4
Median raphe nucleus
nTPM: 232.8
2220 Male, age 76, midline 232.8
Periaquaductal grey, anterior
nTPM: 240.4
1947 Male, age 18, unknown 255.8
1795 Male, age 51, unknown 247.6
2502 Female, age 75, unknown 217.8
Periaquaductal grey, dorsal
nTPM: 259.5
2850 Male, age 76, both hemispheres 298.3
1840 Male, age 53, unknown 274.9
1831 Male, age 72, unknown 236.6
2464 Female, age 72, unknown 228.2
Periaquaductal grey, lateral
nTPM: 245.6
2140 Male, age 76, both hemispheres 261.2
2053 Male, age 18, unknown 247.4
2272 Male, age 74, both hemispheres 228.2
Pretectal area
nTPM: 237.0
1817 Female, age 42, unknown 271.6
2224 Female, age 72, unknown 265.2
2273 Male, age 74, both hemispheres 257.1
1816 Male, age 51, unknown 252.6
2667 Female, age 75, unknown 252.2
1815 Male, age 53, unknown 240.1
1944 Female, age 72, unknown 235.7
2007 Male, age 72, unknown 232.0
2825 Male, age 18, unknown 226.5
2316 Male, age 76, right hemisphere 190.7
2407 Male, age 75, both hemispheres 183.0
Red nucleus
nTPM: 219.5
1821 Female, age 72, unknown 273.1
2725 Female, age 75, unknown 244.4
1954 Female, age 42, unknown 242.8
2503 Female, age 72, unknown 242.3
1904 Male, age 53, unknown 226.1
2227 Male, age 72, unknown 216.8
2769 Male, age 72, unknown 215.3
2823 Male, age 76, right hemisphere 215.3
1865 Male, age 51, unknown 212.4
2785 Male, age 18, unknown 195.2
2588 Male, age 74, left hemisphere 190.8
2584 Male, age 75, left hemisphere 159.7
Substantia nigra
nTPM: 237.5
1916 Female, age 42, unknown 273.8
1851 Male, age 51, unknown 261.8
2699 Male, age 18, unknown 258.0
2241 Male, age 72, unknown 254.3
1889 Female, age 72, unknown 242.6
2583 Male, age 75, right hemisphere 230.0
1941 Male, age 53, unknown 220.6
2409 Female, age 72, unknown 216.5
2665 Male, age 74, both hemispheres 209.3
2590 Female, age 75, unknown 207.6
Superior colliculus
nTPM: 222.3
2087 Female, age 72, unknown 241.4
1995 Male, age 72, unknown 236.8
1796 Male, age 53, unknown 235.2
2261 Male, age 18, unknown 235.2
2668 Female, age 75, unknown 230.9
2664 Male, age 75, both hemispheres 225.0
2587 Male, age 74, left hemisphere 217.2
1839 Male, age 51, unknown 208.5
1913 Female, age 42, unknown 205.2
1895 Male, age 76, right hemisphere 187.4
Ventral tegmental area
nTPM: 240.1
2410 Female, age 72, unknown 263.6
1942 Male, age 51, unknown 251.8
1915 Female, age 42, unknown 241.6
2218 Male, age 76, both hemispheres 233.5
2021 Male, age 53, unknown 231.9
2223 Female, age 72, unknown 217.9

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

274.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 274.7
Samples: 183

Max nTPM: 579.2
Min nTPM: 108.6
Std nTPM: 86.9
Median nTPM: 264.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 579.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 559.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 553.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 526.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 523.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 468.8
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 457.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 457.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 455.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 431.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 418.4
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 416.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 410.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 404.2
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 398.5
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 397.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 397.0
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 394.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 393.6
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 392.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 383.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 383.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 377.6
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 372.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 370.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 367.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 365.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 359.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 357.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 357.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 349.7
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 341.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 332.2
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 330.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 329.7
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 329.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 328.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 327.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 326.6
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 324.4
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 322.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 322.6
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 322.0
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 320.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 318.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 317.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 317.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 317.1
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 316.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 315.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 314.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 314.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 312.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 312.4
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 307.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 307.1
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 305.8
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 303.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 301.2
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 299.1
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 297.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 296.3
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 295.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 295.7
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 295.4
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 294.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 292.7
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 292.5
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 288.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 284.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 283.5
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 280.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 279.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 279.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 278.2
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 278.2
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 277.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 277.5
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 277.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 277.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 275.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 275.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 273.5
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 272.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 272.5
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 270.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 270.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 269.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 269.5
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 266.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 266.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 264.2
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 263.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 262.9
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 260.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 259.2
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 258.9
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 258.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 257.6
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 257.1
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 254.3
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 248.0
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 246.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 245.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 245.2
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 244.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 242.7
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 242.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 242.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 242.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 241.6
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 240.2
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 240.1
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 240.0
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 239.8
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 239.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 239.0
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 238.3
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 237.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 235.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 233.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 232.7
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 232.2
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 231.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 228.6
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 227.3
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 227.2
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 224.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 222.6
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 222.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 220.6
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 220.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 219.7
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 219.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 216.0
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 215.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 215.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 214.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 212.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 210.1
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 209.7
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 209.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 208.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 206.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 206.3
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 203.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 203.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 203.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 202.5
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 202.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 200.9
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 200.9
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 197.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 197.2
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 195.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 192.2
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 192.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 191.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 191.6
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 190.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 189.0
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 187.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 185.3
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 181.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 177.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 176.0
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 171.1
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 168.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 163.6
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 162.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 162.3
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 161.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 161.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 157.1
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 154.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 153.0
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 150.3
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 138.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 135.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 130.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 118.7
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 116.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 108.6
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MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

224.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 224.7
FF:10158-103A5 76 years, female 224.7

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

310.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 263.7
Samples: 4

Max nTPM: 342.5
Min nTPM: 192.0
Sample A Female 342.5
Sample B Female 243.1
Sample C Male 277.2
Sample D Male 192.0
Midbrain
nTPM: 287.5
Samples: 4

Max nTPM: 366.2
Min nTPM: 238.9
Sample A Female 277.3
Sample B Female 238.9
Sample C Male 366.2
Sample D Male 267.7
Periaqueductal gray
nTPM: 229.3
Samples: 3

Max nTPM: 259.0
Min nTPM: 203.2
Sample B Female 225.8
Sample C Male 259.0
Sample D Male 203.2
Superior colliculi
nTPM: 310.8
Samples: 4

Max nTPM: 358.0
Min nTPM: 265.8
Sample A Female 317.3
Sample B Female 302.2
Sample C Male 358.0
Sample D Male 265.8

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

482.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 482.3
Samples: 4

Max nTPM: 494.2
Min nTPM: 468.0
Sample A Male 490.4
Sample B Male 468.0
Sample C Female 476.6
Sample D Female 494.2

MIDBRAIN - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.4
71489783 Antisense, RP_050512_04_E11, Mouse strain C57BL/6J (56 days, male) 21.4

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