A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.5
nTPM
Monaco:
27.2
nTPM
Schmiedel:
38.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.5
HPA sample
nTPM
Memory B-cell nTPM: 0.4
Samples: 6
Max nTPM: 0.9
Min nTPM: 0.0
P10809_1017
0.5
P10809_1025
0.0
P10809_1044
0.0
P10809_1063
0.9
P10809_1092
0.1
P10809_1105
0.7
Naive B-cell nTPM: 0.5
Samples: 6
Max nTPM: 0.8
Min nTPM: 0.0
P10809_1011
0.3
P10809_1029
0.8
P10809_1048
0.0
P10809_1067
0.5
P10809_1091
0.6
P10809_1104
0.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 16.1
Samples: 4
Max nTPM: 24.2
Min nTPM: 8.8
RHH5310_R3677
8.8
RHH5218_R3590
24.2
RHH5247_R3619
13.9
RHH5276_R3648
17.6
Naive B-cell nTPM: 27.3
Samples: 4
Max nTPM: 36.7
Min nTPM: 20.7
RHH5308_R3675
20.7
RHH5216_R3588
25.2
RHH5245_R3617
36.7
RHH5274_R3646
26.4
Non-switched memory B-cell nTPM: 22.4
Samples: 4
Max nTPM: 29.2
Min nTPM: 13.5
RHH5309_R3676
13.5
RHH5217_R3589
17.9
RHH5246_R3618
29.0
RHH5275_R3647
29.2
Plasmablast nTPM: 9.2
Samples: 4
Max nTPM: 11.1
Min nTPM: 7.6
RHH5312_R3679
9.2
RHH5220_R3592
11.1
RHH5249_R3621
7.6
RHH5278_R3650
8.9
Switched memory B-cell nTPM: 16.2
Samples: 4
Max nTPM: 19.8
Min nTPM: 12.7
RHH5311_R3678
12.8
RHH5219_R3591
19.4
RHH5248_R3620
12.7
RHH5277_R3649
19.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.9
Schmiedel sample id
TPM
Naive B-cell TPM: 38.9
Samples: 91
Max TPM: 51.3
Min TPM: 19.2
B_CELL_NAIVE_1
51.3
B_CELL_NAIVE_2
50.4
B_CELL_NAIVE_3
50.1
B_CELL_NAIVE_4
48.9
B_CELL_NAIVE_5
48.5
B_CELL_NAIVE_6
48.1
B_CELL_NAIVE_7
47.6
B_CELL_NAIVE_8
47.4
B_CELL_NAIVE_9
47.0
B_CELL_NAIVE_10
47.0
B_CELL_NAIVE_11
46.7
B_CELL_NAIVE_12
46.4
B_CELL_NAIVE_13
46.1
B_CELL_NAIVE_14
45.9
B_CELL_NAIVE_15
45.9
B_CELL_NAIVE_16
45.1
B_CELL_NAIVE_17
44.5
B_CELL_NAIVE_18
44.0
B_CELL_NAIVE_19
44.0
B_CELL_NAIVE_20
43.8
B_CELL_NAIVE_21
43.7
B_CELL_NAIVE_22
43.4
B_CELL_NAIVE_23
43.2
B_CELL_NAIVE_24
43.1
B_CELL_NAIVE_25
43.0
B_CELL_NAIVE_26
42.8
B_CELL_NAIVE_27
42.8
B_CELL_NAIVE_28
42.7
B_CELL_NAIVE_29
42.5
B_CELL_NAIVE_30
42.3
B_CELL_NAIVE_31
42.1
B_CELL_NAIVE_32
41.9
B_CELL_NAIVE_33
41.7
B_CELL_NAIVE_34
41.6
B_CELL_NAIVE_35
41.3
B_CELL_NAIVE_36
41.1
B_CELL_NAIVE_37
41.1
B_CELL_NAIVE_38
40.9
B_CELL_NAIVE_39
40.8
B_CELL_NAIVE_40
40.8
B_CELL_NAIVE_41
40.2
B_CELL_NAIVE_42
40.2
B_CELL_NAIVE_43
40.1
B_CELL_NAIVE_44
40.1
B_CELL_NAIVE_45
39.8
B_CELL_NAIVE_46
39.2
B_CELL_NAIVE_47
39.2
B_CELL_NAIVE_48
39.1
B_CELL_NAIVE_49
39.0
B_CELL_NAIVE_50
39.0
B_CELL_NAIVE_51
38.8
B_CELL_NAIVE_52
38.8
B_CELL_NAIVE_53
38.7
B_CELL_NAIVE_54
38.7
B_CELL_NAIVE_55
38.7
B_CELL_NAIVE_56
38.5
B_CELL_NAIVE_57
37.4
B_CELL_NAIVE_58
37.0
B_CELL_NAIVE_59
36.9
B_CELL_NAIVE_60
36.6
B_CELL_NAIVE_61
36.4
B_CELL_NAIVE_62
36.4
B_CELL_NAIVE_63
36.2
B_CELL_NAIVE_64
36.1
B_CELL_NAIVE_65
36.0
B_CELL_NAIVE_66
35.9
B_CELL_NAIVE_67
35.7
B_CELL_NAIVE_68
35.5
B_CELL_NAIVE_69
35.4
B_CELL_NAIVE_70
35.3
B_CELL_NAIVE_71
35.3
B_CELL_NAIVE_72
34.1
B_CELL_NAIVE_73
33.9
B_CELL_NAIVE_74
33.5
B_CELL_NAIVE_75
32.4
B_CELL_NAIVE_76
31.9
B_CELL_NAIVE_77
31.9
B_CELL_NAIVE_78
31.0
B_CELL_NAIVE_79
30.9
B_CELL_NAIVE_80
30.7
B_CELL_NAIVE_81
30.4
B_CELL_NAIVE_82
30.4
B_CELL_NAIVE_83
29.8
B_CELL_NAIVE_84
29.7
B_CELL_NAIVE_85
29.5
B_CELL_NAIVE_86
28.1
B_CELL_NAIVE_87
27.9
B_CELL_NAIVE_88
26.1
B_CELL_NAIVE_89
25.0
B_CELL_NAIVE_90
23.9
B_CELL_NAIVE_91
19.2
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
