A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.7
nTPM
Monaco:
19.2
nTPM
Schmiedel:
28.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.7
HPA sample
nTPM
Classical monocyte nTPM: 0.6
Samples: 6
Max nTPM: 0.9
Min nTPM: 0.2
P10809_1003
0.7
P10809_1020
0.2
P10809_1039
0.2
P10809_1058
0.9
P10809_1080
0.6
P10809_1107
0.8
Intermediate monocyte nTPM: 0.7
Samples: 6
Max nTPM: 1.4
Min nTPM: 0.0
P10809_1004
1.1
P10809_1023
1.4
P10809_1042
0.9
P10809_1061
0.0
P10809_1081
0.6
P10809_1108
0.4
Non-classical monocyte nTPM: 0.6
Samples: 5
Max nTPM: 0.9
Min nTPM: 0.0
P10809_1005
0.9
P10809_1053
0.8
P10809_1072
0.0
P10809_1082
0.8
P10809_1109
0.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.2
Monaco sample
nTPM
Classical monocyte nTPM: 15.2
Samples: 4
Max nTPM: 17.6
Min nTPM: 12.4
RHH5313_R3680
14.1
RHH5221_R3593
12.4
RHH5250_R3622
16.5
RHH5279_R3651
17.6
Intermediate monocyte nTPM: 14.3
Samples: 4
Max nTPM: 17.7
Min nTPM: 9.5
RHH5314_R3681
14.8
RHH5222_R3594
17.7
RHH5251_R3623
9.5
RHH5280_R3652
15.1
Non-classical monocyte nTPM: 19.2
Samples: 4
Max nTPM: 26.0
Min nTPM: 11.5
RHH5315_R3682
19.3
RHH5223_R3595
26.0
RHH5252_R3624
20.0
RHH5281_R3653
11.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.0
Schmiedel sample id
TPM
Classical monocyte TPM: 17.4
Samples: 91
Max TPM: 23.0
Min TPM: 9.5
MONOCYTES_1
23.0
MONOCYTES_2
22.0
MONOCYTES_3
21.8
MONOCYTES_4
21.8
MONOCYTES_5
21.7
MONOCYTES_6
21.6
MONOCYTES_7
21.5
MONOCYTES_8
21.2
MONOCYTES_9
20.7
MONOCYTES_10
20.5
MONOCYTES_11
20.1
MONOCYTES_12
20.1
MONOCYTES_13
20.0
MONOCYTES_14
19.8
MONOCYTES_15
19.7
MONOCYTES_16
19.6
MONOCYTES_17
19.4
MONOCYTES_18
19.3
MONOCYTES_19
19.3
MONOCYTES_20
19.0
MONOCYTES_21
18.9
MONOCYTES_22
18.9
MONOCYTES_23
18.9
MONOCYTES_24
18.8
MONOCYTES_25
18.8
MONOCYTES_26
18.8
MONOCYTES_27
18.8
MONOCYTES_28
18.7
MONOCYTES_29
18.6
MONOCYTES_30
18.6
MONOCYTES_31
18.5
MONOCYTES_32
18.5
MONOCYTES_33
18.5
MONOCYTES_34
18.3
MONOCYTES_35
18.2
MONOCYTES_36
18.1
MONOCYTES_37
18.0
MONOCYTES_38
18.0
MONOCYTES_39
18.0
MONOCYTES_40
18.0
MONOCYTES_41
17.9
MONOCYTES_42
17.8
MONOCYTES_43
17.7
MONOCYTES_44
17.7
MONOCYTES_45
17.7
MONOCYTES_46
17.6
MONOCYTES_47
17.6
MONOCYTES_48
17.5
MONOCYTES_49
17.5
MONOCYTES_50
17.5
MONOCYTES_51
17.5
MONOCYTES_52
17.4
MONOCYTES_53
17.2
MONOCYTES_54
17.2
MONOCYTES_55
17.1
MONOCYTES_56
17.1
MONOCYTES_57
17.0
MONOCYTES_58
16.9
MONOCYTES_59
16.9
MONOCYTES_60
16.6
MONOCYTES_61
16.6
MONOCYTES_62
16.5
MONOCYTES_63
16.5
MONOCYTES_64
16.3
MONOCYTES_65
16.1
MONOCYTES_66
16.0
MONOCYTES_67
15.9
MONOCYTES_68
15.7
MONOCYTES_69
15.7
MONOCYTES_70
15.6
MONOCYTES_71
15.3
MONOCYTES_72
15.3
MONOCYTES_73
15.3
MONOCYTES_74
15.3
MONOCYTES_75
15.1
MONOCYTES_76
15.0
MONOCYTES_77
15.0
MONOCYTES_78
14.8
MONOCYTES_79
14.8
MONOCYTES_80
14.7
MONOCYTES_81
14.7
MONOCYTES_82
14.5
MONOCYTES_83
14.3
MONOCYTES_84
13.9
MONOCYTES_85
13.6
MONOCYTES_86
12.2
MONOCYTES_87
11.9
MONOCYTES_88
11.8
MONOCYTES_89
11.8
MONOCYTES_90
11.6
MONOCYTES_91
9.5
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Non-classical monocyte TPM: 28.0
Samples: 90
Max TPM: 50.5
Min TPM: 17.1
M2_1
50.5
M2_2
37.1
M2_3
36.2
M2_4
35.7
M2_5
35.4
M2_6
34.9
M2_7
34.8
M2_8
34.6
M2_9
34.4
M2_10
33.4
M2_11
33.0
M2_12
32.9
M2_13
32.6
M2_14
32.5
M2_15
32.4
M2_16
32.1
M2_17
32.1
M2_18
32.1
M2_19
31.8
M2_20
31.7
M2_21
31.5
M2_22
31.5
M2_23
31.3
M2_24
31.0
M2_25
30.9
M2_26
30.8
M2_27
30.8
M2_28
30.7
M2_29
30.6
M2_30
30.4
M2_31
30.4
M2_32
30.4
M2_33
30.0
M2_34
30.0
M2_35
29.8
M2_36
29.7
M2_37
29.7
M2_38
29.2
M2_39
29.2
M2_40
28.8
M2_41
28.6
M2_42
28.5
M2_43
28.5
M2_44
28.3
M2_45
28.1
M2_46
28.1
M2_47
27.6
M2_48
27.3
M2_49
27.3
M2_50
27.2
M2_51
27.0
M2_52
26.9
M2_53
26.7
M2_54
26.7
M2_55
26.3
M2_56
26.2
M2_57
26.1
M2_58
26.0
M2_59
25.8
M2_60
25.7
M2_61
25.7
M2_62
25.6
M2_63
25.2
M2_64
25.2
M2_65
25.0
M2_66
24.9
M2_67
24.7
M2_68
24.6
M2_69
24.6
M2_70
24.5
M2_71
24.4
M2_72
24.4
M2_73
23.9
M2_74
23.3
M2_75
23.3
M2_76
23.1
M2_77
22.8
M2_78
22.6
M2_79
22.4
M2_80
22.3
M2_81
22.3
M2_82
21.7
M2_83
21.2
M2_84
20.0
M2_85
19.9
M2_86
19.5
M2_87
19.4
M2_88
19.2
M2_89
19.0
M2_90
17.1
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