A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.6
nTPM
Monaco:
12.9
nTPM
Schmiedel:
27.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.6
HPA sample
nTPM
NK-cell nTPM: 0.6
Samples: 6
Max nTPM: 2.2
Min nTPM: 0.0
P10809_1013
0.3
P10809_1033
0.0
P10809_1052
0.2
P10809_1071
2.2
P10809_1093
0.0
P10809_1103
1.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.9
Monaco sample
nTPM
NK-cell nTPM: 12.9
Samples: 4
Max nTPM: 15.9
Min nTPM: 8.6
RHH5316_R3683
8.6
RHH5224_R3596
13.6
RHH5253_R3625
15.9
RHH5282_R3654
13.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.0
Schmiedel sample id
TPM
NK-cell TPM: 27.0
Samples: 90
Max TPM: 38.2
Min TPM: 15.6
NK_1
38.2
NK_2
35.9
NK_3
33.3
NK_4
32.8
NK_5
32.7
NK_6
32.7
NK_7
32.4
NK_8
32.3
NK_9
32.3
NK_10
32.2
NK_11
32.1
NK_12
32.0
NK_13
31.6
NK_14
31.6
NK_15
31.6
NK_16
31.6
NK_17
31.1
NK_18
31.1
NK_19
30.7
NK_20
30.7
NK_21
30.6
NK_22
30.3
NK_23
30.2
NK_24
30.1
NK_25
30.1
NK_26
29.9
NK_27
29.6
NK_28
29.3
NK_29
29.2
NK_30
29.1
NK_31
29.1
NK_32
28.8
NK_33
28.7
NK_34
28.6
NK_35
28.5
NK_36
28.4
NK_37
28.2
NK_38
28.0
NK_39
27.9
NK_40
27.8
NK_41
27.7
NK_42
27.6
NK_43
27.6
NK_44
27.6
NK_45
27.5
NK_46
27.4
NK_47
27.3
NK_48
27.2
NK_49
26.9
NK_50
26.9
NK_51
26.8
NK_52
26.7
NK_53
26.6
NK_54
26.3
NK_55
26.0
NK_56
26.0
NK_57
25.9
NK_58
25.7
NK_59
25.7
NK_60
25.6
NK_61
25.5
NK_62
25.5
NK_63
25.2
NK_64
25.1
NK_65
25.1
NK_66
25.1
NK_67
25.0
NK_68
24.9
NK_69
24.8
NK_70
24.7
NK_71
24.4
NK_72
24.0
NK_73
23.7
NK_74
23.0
NK_75
22.3
NK_76
22.0
NK_77
21.6
NK_78
21.3
NK_79
21.0
NK_80
20.8
NK_81
20.6
NK_82
20.5
NK_83
20.4
NK_84
20.3
NK_85
19.9
NK_86
19.0
NK_87
19.0
NK_88
17.9
NK_89
17.2
NK_90
15.6
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