A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
32.6
nTPM
Monaco:
117.6
nTPM
Schmiedel:
140.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.6
HPA sample
nTPM
Memory B-cell nTPM: 32.6
Samples: 6
Max nTPM: 43.4
Min nTPM: 21.0
P10809_1017
33.5
P10809_1025
43.4
P10809_1044
35.8
P10809_1063
21.0
P10809_1092
40.0
P10809_1105
22.1
Naive B-cell nTPM: 29.6
Samples: 6
Max nTPM: 41.6
Min nTPM: 11.3
P10809_1011
31.6
P10809_1029
36.0
P10809_1048
11.3
P10809_1067
19.8
P10809_1091
41.6
P10809_1104
37.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
117.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 109.6
Samples: 4
Max nTPM: 131.1
Min nTPM: 81.1
RHH5310_R3677
98.2
RHH5218_R3590
131.1
RHH5247_R3619
127.9
RHH5276_R3648
81.1
Naive B-cell nTPM: 117.6
Samples: 4
Max nTPM: 131.0
Min nTPM: 108.3
RHH5308_R3675
111.8
RHH5216_R3588
131.0
RHH5245_R3617
108.3
RHH5274_R3646
119.2
Non-switched memory B-cell nTPM: 95.1
Samples: 4
Max nTPM: 113.8
Min nTPM: 70.0
RHH5309_R3676
70.0
RHH5217_R3589
98.8
RHH5246_R3618
113.8
RHH5275_R3647
97.6
Plasmablast nTPM: 82.6
Samples: 4
Max nTPM: 97.1
Min nTPM: 72.8
RHH5312_R3679
78.5
RHH5220_R3592
82.0
RHH5249_R3621
72.8
RHH5278_R3650
97.1
Switched memory B-cell nTPM: 90.2
Samples: 4
Max nTPM: 110.8
Min nTPM: 60.1
RHH5311_R3678
60.1
RHH5219_R3591
110.8
RHH5248_R3620
101.9
RHH5277_R3649
87.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
140.3
Schmiedel sample id
TPM
Naive B-cell TPM: 140.3
Samples: 91
Max TPM: 179.0
Min TPM: 105.8
B_CELL_NAIVE_1
179.0
B_CELL_NAIVE_2
170.0
B_CELL_NAIVE_3
166.7
B_CELL_NAIVE_4
164.7
B_CELL_NAIVE_5
163.7
B_CELL_NAIVE_6
163.3
B_CELL_NAIVE_7
162.5
B_CELL_NAIVE_8
162.2
B_CELL_NAIVE_9
161.6
B_CELL_NAIVE_10
161.3
B_CELL_NAIVE_11
161.0
B_CELL_NAIVE_12
159.7
B_CELL_NAIVE_13
159.5
B_CELL_NAIVE_14
159.1
B_CELL_NAIVE_15
158.6
B_CELL_NAIVE_16
158.4
B_CELL_NAIVE_17
158.3
B_CELL_NAIVE_18
158.3
B_CELL_NAIVE_19
158.1
B_CELL_NAIVE_20
157.0
B_CELL_NAIVE_21
156.9
B_CELL_NAIVE_22
155.8
B_CELL_NAIVE_23
154.6
B_CELL_NAIVE_24
154.1
B_CELL_NAIVE_25
153.9
B_CELL_NAIVE_26
153.5
B_CELL_NAIVE_27
152.8
B_CELL_NAIVE_28
151.0
B_CELL_NAIVE_29
150.7
B_CELL_NAIVE_30
150.2
B_CELL_NAIVE_31
149.2
B_CELL_NAIVE_32
148.6
B_CELL_NAIVE_33
147.5
B_CELL_NAIVE_34
147.3
B_CELL_NAIVE_35
147.0
B_CELL_NAIVE_36
146.5
B_CELL_NAIVE_37
146.1
B_CELL_NAIVE_38
145.8
B_CELL_NAIVE_39
144.9
B_CELL_NAIVE_40
143.4
B_CELL_NAIVE_41
142.5
B_CELL_NAIVE_42
141.9
B_CELL_NAIVE_43
141.5
B_CELL_NAIVE_44
140.9
B_CELL_NAIVE_45
140.6
B_CELL_NAIVE_46
140.0
B_CELL_NAIVE_47
139.9
B_CELL_NAIVE_48
139.6
B_CELL_NAIVE_49
139.0
B_CELL_NAIVE_50
137.9
B_CELL_NAIVE_51
137.5
B_CELL_NAIVE_52
137.4
B_CELL_NAIVE_53
136.4
B_CELL_NAIVE_54
136.3
B_CELL_NAIVE_55
135.8
B_CELL_NAIVE_56
135.4
B_CELL_NAIVE_57
133.7
B_CELL_NAIVE_58
133.5
B_CELL_NAIVE_59
132.9
B_CELL_NAIVE_60
132.6
B_CELL_NAIVE_61
132.1
B_CELL_NAIVE_62
131.7
B_CELL_NAIVE_63
131.2
B_CELL_NAIVE_64
131.1
B_CELL_NAIVE_65
131.0
B_CELL_NAIVE_66
130.4
B_CELL_NAIVE_67
129.4
B_CELL_NAIVE_68
128.7
B_CELL_NAIVE_69
128.1
B_CELL_NAIVE_70
126.8
B_CELL_NAIVE_71
125.9
B_CELL_NAIVE_72
125.5
B_CELL_NAIVE_73
124.1
B_CELL_NAIVE_74
123.5
B_CELL_NAIVE_75
122.6
B_CELL_NAIVE_76
121.7
B_CELL_NAIVE_77
121.2
B_CELL_NAIVE_78
120.6
B_CELL_NAIVE_79
120.5
B_CELL_NAIVE_80
119.4
B_CELL_NAIVE_81
118.8
B_CELL_NAIVE_82
116.8
B_CELL_NAIVE_83
116.6
B_CELL_NAIVE_84
116.5
B_CELL_NAIVE_85
115.0
B_CELL_NAIVE_86
113.9
B_CELL_NAIVE_87
113.2
B_CELL_NAIVE_88
112.7
B_CELL_NAIVE_89
110.1
B_CELL_NAIVE_90
108.3
B_CELL_NAIVE_91
105.8
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The Human Protein Atlas project is funded
