A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
44.7
nTPM
Monaco:
202.3
nTPM
Schmiedel:
143.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.7
HPA sample
nTPM
Classical monocyte nTPM: 16.4
Samples: 6
Max nTPM: 19.9
Min nTPM: 10.8
P10809_1003
16.7
P10809_1020
19.9
P10809_1039
19.4
P10809_1058
10.8
P10809_1080
16.9
P10809_1107
14.8
Intermediate monocyte nTPM: 31.0
Samples: 6
Max nTPM: 43.5
Min nTPM: 24.1
P10809_1004
32.0
P10809_1023
43.5
P10809_1042
37.3
P10809_1061
24.8
P10809_1081
24.1
P10809_1108
24.2
Non-classical monocyte nTPM: 44.7
Samples: 5
Max nTPM: 49.5
Min nTPM: 39.0
P10809_1005
49.5
P10809_1053
49.2
P10809_1072
39.2
P10809_1082
39.0
P10809_1109
46.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
202.3
Monaco sample
nTPM
Classical monocyte nTPM: 79.7
Samples: 4
Max nTPM: 96.7
Min nTPM: 68.8
RHH5313_R3680
75.5
RHH5221_R3593
96.7
RHH5250_R3622
77.7
RHH5279_R3651
68.8
Intermediate monocyte nTPM: 133.0
Samples: 4
Max nTPM: 187.1
Min nTPM: 74.4
RHH5314_R3681
98.1
RHH5222_R3594
187.1
RHH5251_R3623
172.4
RHH5280_R3652
74.4
Non-classical monocyte nTPM: 202.3
Samples: 4
Max nTPM: 287.7
Min nTPM: 109.4
RHH5315_R3682
196.7
RHH5223_R3595
287.7
RHH5252_R3624
215.5
RHH5281_R3653
109.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
143.7
Schmiedel sample id
TPM
Classical monocyte TPM: 44.6
Samples: 91
Max TPM: 63.8
Min TPM: 35.9
MONOCYTES_1
63.8
MONOCYTES_2
58.4
MONOCYTES_3
57.0
MONOCYTES_4
54.6
MONOCYTES_5
54.1
MONOCYTES_6
53.5
MONOCYTES_7
52.8
MONOCYTES_8
52.4
MONOCYTES_9
52.3
MONOCYTES_10
51.8
MONOCYTES_11
51.5
MONOCYTES_12
50.5
MONOCYTES_13
50.2
MONOCYTES_14
49.7
MONOCYTES_15
49.1
MONOCYTES_16
49.1
MONOCYTES_17
48.8
MONOCYTES_18
48.5
MONOCYTES_19
48.4
MONOCYTES_20
48.4
MONOCYTES_21
48.3
MONOCYTES_22
48.0
MONOCYTES_23
47.7
MONOCYTES_24
47.6
MONOCYTES_25
47.1
MONOCYTES_26
47.0
MONOCYTES_27
46.6
MONOCYTES_28
46.6
MONOCYTES_29
46.5
MONOCYTES_30
46.3
MONOCYTES_31
46.3
MONOCYTES_32
46.1
MONOCYTES_33
46.0
MONOCYTES_34
45.7
MONOCYTES_35
45.7
MONOCYTES_36
45.6
MONOCYTES_37
45.2
MONOCYTES_38
45.0
MONOCYTES_39
44.9
MONOCYTES_40
44.9
MONOCYTES_41
44.7
MONOCYTES_42
44.6
MONOCYTES_43
44.2
MONOCYTES_44
44.2
MONOCYTES_45
44.1
MONOCYTES_46
44.0
MONOCYTES_47
44.0
MONOCYTES_48
43.8
MONOCYTES_49
43.7
MONOCYTES_50
43.7
MONOCYTES_51
43.4
MONOCYTES_52
42.9
MONOCYTES_53
42.7
MONOCYTES_54
42.3
MONOCYTES_55
42.3
MONOCYTES_56
42.2
MONOCYTES_57
42.2
MONOCYTES_58
42.1
MONOCYTES_59
42.1
MONOCYTES_60
42.0
MONOCYTES_61
41.9
MONOCYTES_62
41.9
MONOCYTES_63
41.8
MONOCYTES_64
41.7
MONOCYTES_65
41.7
MONOCYTES_66
41.7
MONOCYTES_67
41.7
MONOCYTES_68
41.6
MONOCYTES_69
41.3
MONOCYTES_70
41.3
MONOCYTES_71
41.2
MONOCYTES_72
40.2
MONOCYTES_73
40.2
MONOCYTES_74
40.2
MONOCYTES_75
39.8
MONOCYTES_76
39.5
MONOCYTES_77
39.5
MONOCYTES_78
39.4
MONOCYTES_79
39.3
MONOCYTES_80
39.3
MONOCYTES_81
39.2
MONOCYTES_82
38.0
MONOCYTES_83
37.8
MONOCYTES_84
37.5
MONOCYTES_85
37.2
MONOCYTES_86
36.7
MONOCYTES_87
36.6
MONOCYTES_88
36.6
MONOCYTES_89
36.5
MONOCYTES_90
36.0
MONOCYTES_91
35.9
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Non-classical monocyte TPM: 143.7
Samples: 90
Max TPM: 212.1
Min TPM: 94.1
M2_1
212.1
M2_2
194.9
M2_3
190.8
M2_4
189.0
M2_5
188.0
M2_6
184.4
M2_7
177.4
M2_8
176.2
M2_9
175.2
M2_10
174.7
M2_11
172.3
M2_12
170.2
M2_13
165.6
M2_14
164.0
M2_15
163.7
M2_16
162.7
M2_17
162.7
M2_18
162.6
M2_19
162.5
M2_20
162.0
M2_21
161.7
M2_22
161.2
M2_23
160.6
M2_24
160.0
M2_25
159.1
M2_26
157.4
M2_27
156.6
M2_28
155.9
M2_29
154.3
M2_30
154.0
M2_31
154.0
M2_32
153.1
M2_33
152.5
M2_34
152.3
M2_35
151.1
M2_36
150.8
M2_37
150.0
M2_38
148.1
M2_39
147.5
M2_40
147.0
M2_41
145.9
M2_42
144.2
M2_43
143.8
M2_44
143.6
M2_45
143.5
M2_46
142.8
M2_47
142.3
M2_48
141.8
M2_49
141.8
M2_50
140.1
M2_51
139.7
M2_52
138.7
M2_53
137.8
M2_54
137.6
M2_55
137.4
M2_56
136.4
M2_57
136.3
M2_58
136.3
M2_59
135.7
M2_60
135.7
M2_61
135.2
M2_62
135.2
M2_63
133.0
M2_64
131.9
M2_65
128.8
M2_66
128.2
M2_67
127.3
M2_68
124.6
M2_69
124.0
M2_70
123.6
M2_71
123.2
M2_72
123.2
M2_73
120.6
M2_74
120.5
M2_75
120.4
M2_76
119.2
M2_77
118.8
M2_78
118.1
M2_79
117.1
M2_80
115.2
M2_81
114.9
M2_82
114.1
M2_83
111.3
M2_84
109.1
M2_85
105.3
M2_86
103.5
M2_87
99.6
M2_88
98.7
M2_89
97.9
M2_90
94.1
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