A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
33.0
nTPM
Monaco:
83.5
nTPM
Schmiedel:
96.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.0
HPA sample
nTPM
NK-cell nTPM: 33.0
Samples: 6
Max nTPM: 72.1
Min nTPM: 11.7
P10809_1013
21.0
P10809_1033
28.9
P10809_1052
11.7
P10809_1071
28.6
P10809_1093
72.1
P10809_1103
35.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
83.5
Monaco sample
nTPM
NK-cell nTPM: 83.5
Samples: 4
Max nTPM: 95.5
Min nTPM: 74.0
RHH5316_R3683
83.9
RHH5224_R3596
95.5
RHH5253_R3625
80.5
RHH5282_R3654
74.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
96.9
Schmiedel sample id
TPM
NK-cell TPM: 96.9
Samples: 90
Max TPM: 130.2
Min TPM: 58.5
NK_1
130.2
NK_2
123.0
NK_3
121.6
NK_4
120.6
NK_5
119.1
NK_6
118.0
NK_7
117.8
NK_8
117.6
NK_9
116.2
NK_10
115.8
NK_11
113.3
NK_12
113.0
NK_13
111.8
NK_14
111.8
NK_15
111.5
NK_16
110.9
NK_17
110.3
NK_18
110.2
NK_19
110.1
NK_20
109.7
NK_21
109.6
NK_22
107.6
NK_23
106.7
NK_24
106.5
NK_25
106.4
NK_26
105.8
NK_27
105.7
NK_28
105.3
NK_29
103.8
NK_30
102.7
NK_31
102.1
NK_32
100.9
NK_33
100.7
NK_34
100.6
NK_35
99.6
NK_36
99.1
NK_37
99.1
NK_38
98.4
NK_39
98.1
NK_40
98.0
NK_41
97.6
NK_42
97.6
NK_43
97.6
NK_44
97.6
NK_45
97.2
NK_46
96.6
NK_47
96.6
NK_48
96.1
NK_49
95.7
NK_50
95.6
NK_51
95.5
NK_52
95.4
NK_53
94.8
NK_54
94.3
NK_55
94.2
NK_56
93.5
NK_57
93.5
NK_58
92.1
NK_59
92.0
NK_60
91.7
NK_61
91.6
NK_62
90.8
NK_63
89.9
NK_64
88.5
NK_65
87.7
NK_66
87.6
NK_67
86.9
NK_68
86.5
NK_69
86.1
NK_70
85.5
NK_71
84.7
NK_72
84.5
NK_73
83.9
NK_74
83.5
NK_75
83.3
NK_76
83.0
NK_77
82.7
NK_78
82.3
NK_79
81.3
NK_80
80.2
NK_81
80.2
NK_82
79.5
NK_83
79.0
NK_84
78.1
NK_85
77.3
NK_86
76.1
NK_87
72.9
NK_88
70.7
NK_89
65.2
NK_90
58.5
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