MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.8 nTPM
HPA Brain:129.9 nTPM
GTEx:19.8 nTPM
FANTOM5:102.0 Scaled Tags Per Million
Pig:82.1 nTPM
Mouse:20.9 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 129.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 121.3
2586 Male, age 75, left hemisphere 184.6
2019 Male, age 18, unknown 178.2
2828 Female, age 72, unknown 124.2
1830 Male, age 51, unknown 124.0
2666 Male, age 74, left hemisphere 117.4
1833 Male, age 53, unknown 116.0
1870 Female, age 42, unknown 99.8
1827 Male, age 72, unknown 93.1
2219 Male, age 76, both hemispheres 89.1
2411 Female, age 72, unknown 86.3
Dorsal raphe nucleus
nTPM: 103.2
1828 Male, age 53, unknown 123.3
2750 Male, age 76, both hemispheres 110.0
2016 Female, age 72, unknown 108.2
2047 Male, age 72, unknown 97.7
2298 Female, age 72, unknown 77.0
Inferior colliculus
nTPM: 117.4
2849 Male, age 72, unknown 131.9
1848 Female, age 42, unknown 120.1
1890 Male, age 53, unknown 114.9
2097 Female, age 72, unknown 102.6
Median raphe nucleus
nTPM: 86.7
2220 Male, age 76, midline 86.7
Periaquaductal grey, anterior
nTPM: 110.5
2502 Female, age 75, unknown 125.6
1795 Male, age 51, unknown 107.2
1947 Male, age 18, unknown 98.7
Periaquaductal grey, dorsal
nTPM: 93.8
2850 Male, age 76, both hemispheres 110.0
2464 Female, age 72, unknown 98.6
1840 Male, age 53, unknown 83.7
1831 Male, age 72, unknown 82.9
Periaquaductal grey, lateral
nTPM: 104.1
2140 Male, age 76, both hemispheres 126.6
2272 Male, age 74, both hemispheres 105.0
2053 Male, age 18, unknown 80.8
Pretectal area
nTPM: 109.1
2007 Male, age 72, unknown 141.2
1817 Female, age 42, unknown 139.5
2316 Male, age 76, right hemisphere 123.2
2407 Male, age 75, both hemispheres 118.2
1815 Male, age 53, unknown 109.7
2667 Female, age 75, unknown 108.1
1944 Female, age 72, unknown 105.6
1816 Male, age 51, unknown 99.8
2273 Male, age 74, both hemispheres 94.6
2825 Male, age 18, unknown 86.5
2224 Female, age 72, unknown 73.5
Red nucleus
nTPM: 129.9
2785 Male, age 18, unknown 180.3
2227 Male, age 72, unknown 144.4
2769 Male, age 72, unknown 143.6
2823 Male, age 76, right hemisphere 135.0
2584 Male, age 75, left hemisphere 133.3
1865 Male, age 51, unknown 132.6
1904 Male, age 53, unknown 119.4
2588 Male, age 74, left hemisphere 117.9
2503 Female, age 72, unknown 117.8
1954 Female, age 42, unknown 115.7
2725 Female, age 75, unknown 110.3
1821 Female, age 72, unknown 108.9
Substantia nigra
nTPM: 94.1
2583 Male, age 75, right hemisphere 124.4
2665 Male, age 74, both hemispheres 103.9
1889 Female, age 72, unknown 102.5
1941 Male, age 53, unknown 98.0
2590 Female, age 75, unknown 97.7
1851 Male, age 51, unknown 94.8
2699 Male, age 18, unknown 91.6
1916 Female, age 42, unknown 83.4
2409 Female, age 72, unknown 78.2
2241 Male, age 72, unknown 66.7
Superior colliculus
nTPM: 112.5
2664 Male, age 75, both hemispheres 162.9
1995 Male, age 72, unknown 122.8
1913 Female, age 42, unknown 113.5
1839 Male, age 51, unknown 112.4
2668 Female, age 75, unknown 107.1
1895 Male, age 76, right hemisphere 104.1
1796 Male, age 53, unknown 103.6
2087 Female, age 72, unknown 102.9
2587 Male, age 74, left hemisphere 102.7
2261 Male, age 18, unknown 92.5
Ventral tegmental area
nTPM: 93.8
2223 Female, age 72, unknown 111.9
2218 Male, age 76, both hemispheres 95.7
2021 Male, age 53, unknown 94.9
1942 Male, age 51, unknown 91.5
1915 Female, age 42, unknown 84.4
2410 Female, age 72, unknown 84.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 19.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.8
Samples: 139

Max nTPM: 34.0
Min nTPM: 9.7
Std nTPM: 5.2
Median nTPM: 18.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 34.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 33.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 32.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 31.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 31.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 29.8
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 29.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 28.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 28.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 28.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 28.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 102.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 102.0
FF:10158-103A5 76 years, female 102.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 82.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 67.3
Samples: 4

Max nTPM: 75.8
Min nTPM: 60.5
Sample A Female 62.3
Sample B Female 70.5
Sample C Male 60.5
Sample D Male 75.8
Midbrain
nTPM: 64.0
Samples: 4

Max nTPM: 69.6
Min nTPM: 58.8
Sample A Female 69.6
Sample B Female 58.8
Sample C Male 66.2
Sample D Male 61.5
Periaqueductal gray
nTPM: 57.0
Samples: 3

Max nTPM: 57.2
Min nTPM: 56.7
Sample B Female 56.7
Sample C Male 57.2
Sample D Male 57.2
Superior colliculi
nTPM: 82.1
Samples: 4

Max nTPM: 85.5
Min nTPM: 78.3
Sample A Female 85.5
Sample B Female 78.3
Sample C Male 85.3
Sample D Male 79.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 20.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.9
Samples: 4

Max nTPM: 23.4
Min nTPM: 19.3
Sample A Male 23.4
Sample B Male 20.2
Sample C Female 19.3
Sample D Female 20.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
74988734 Antisense, RP_060315_04_B02, Mouse strain C57BL/6J (56 days, male) 3.3
70593313 Antisense, RP_050407_03_C12, Mouse strain C57BL/6J (56 days, male) 3.1

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