MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:107.7 nTPM
HPA Brain:62.5 nTPM
GTEx:107.7 nTPM
FANTOM5:101.0 Scaled Tags Per Million
Pig:104.2 nTPM
Mouse:258.3 nTPM
Allen mouse:4.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 62.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.2
2411 Female, age 72, unknown 59.8
1870 Female, age 42, unknown 57.9
1827 Male, age 72, unknown 56.5
2828 Female, age 72, unknown 51.0
2666 Male, age 74, left hemisphere 49.5
2019 Male, age 18, unknown 49.4
2219 Male, age 76, both hemispheres 48.5
1833 Male, age 53, unknown 48.0
2586 Male, age 75, left hemisphere 45.8
1830 Male, age 51, unknown 45.2
Dorsal raphe nucleus
nTPM: 60.6
2298 Female, age 72, unknown 78.0
2047 Male, age 72, unknown 60.3
2750 Male, age 76, both hemispheres 59.1
1828 Male, age 53, unknown 57.8
2016 Female, age 72, unknown 47.7
Inferior colliculus
nTPM: 50.4
2097 Female, age 72, unknown 57.3
1848 Female, age 42, unknown 49.2
1890 Male, age 53, unknown 48.4
2849 Male, age 72, unknown 46.6
Median raphe nucleus
nTPM: 58.9
2220 Male, age 76, midline 58.9
Periaquaductal grey, anterior
nTPM: 56.7
1795 Male, age 51, unknown 57.4
1947 Male, age 18, unknown 57.3
2502 Female, age 75, unknown 55.3
Periaquaductal grey, dorsal
nTPM: 45.0
1840 Male, age 53, unknown 49.8
2850 Male, age 76, both hemispheres 47.0
2464 Female, age 72, unknown 45.8
1831 Male, age 72, unknown 37.5
Periaquaductal grey, lateral
nTPM: 48.3
2272 Male, age 74, both hemispheres 56.2
2140 Male, age 76, both hemispheres 44.5
2053 Male, age 18, unknown 44.2
Pretectal area
nTPM: 53.6
2007 Male, age 72, unknown 60.2
2224 Female, age 72, unknown 60.0
2273 Male, age 74, both hemispheres 58.9
2667 Female, age 75, unknown 58.2
1817 Female, age 42, unknown 56.6
1816 Male, age 51, unknown 54.0
1944 Female, age 72, unknown 53.4
1815 Male, age 53, unknown 51.2
2825 Male, age 18, unknown 51.1
2316 Male, age 76, right hemisphere 44.4
2407 Male, age 75, both hemispheres 41.4
Red nucleus
nTPM: 51.2
1821 Female, age 72, unknown 64.0
2769 Male, age 72, unknown 55.3
2503 Female, age 72, unknown 54.4
2725 Female, age 75, unknown 54.3
2785 Male, age 18, unknown 52.9
1954 Female, age 42, unknown 52.3
1904 Male, age 53, unknown 51.5
2227 Male, age 72, unknown 51.3
1865 Male, age 51, unknown 50.6
2823 Male, age 76, right hemisphere 47.6
2588 Male, age 74, left hemisphere 42.6
2584 Male, age 75, left hemisphere 37.0
Substantia nigra
nTPM: 62.5
1916 Female, age 42, unknown 90.4
1851 Male, age 51, unknown 75.1
2241 Male, age 72, unknown 67.3
1941 Male, age 53, unknown 64.6
2699 Male, age 18, unknown 62.7
1889 Female, age 72, unknown 61.3
2409 Female, age 72, unknown 60.7
2665 Male, age 74, both hemispheres 51.8
2583 Male, age 75, right hemisphere 46.2
2590 Female, age 75, unknown 45.4
Superior colliculus
nTPM: 49.5
1796 Male, age 53, unknown 59.0
2668 Female, age 75, unknown 58.1
2587 Male, age 74, left hemisphere 54.4
2261 Male, age 18, unknown 53.0
1895 Male, age 76, right hemisphere 49.4
1913 Female, age 42, unknown 47.5
1839 Male, age 51, unknown 46.4
2087 Female, age 72, unknown 46.0
1995 Male, age 72, unknown 41.3
2664 Male, age 75, both hemispheres 39.8
Ventral tegmental area
nTPM: 60.2
1915 Female, age 42, unknown 70.2
2410 Female, age 72, unknown 64.6
2218 Male, age 76, both hemispheres 62.6
2223 Female, age 72, unknown 57.1
1942 Male, age 51, unknown 56.7
2021 Male, age 53, unknown 49.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 107.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 107.7
Samples: 183

Max nTPM: 188.6
Min nTPM: 64.3
Std nTPM: 22.1
Median nTPM: 103.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 188.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 179.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 171.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 164.4
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 163.0
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 160.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 158.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 154.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 154.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 152.1
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 150.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 101.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.0
FF:10158-103A5 76 years, female 101.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 104.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 104.2
Samples: 4

Max nTPM: 151.2
Min nTPM: 72.3
Sample A Female 151.2
Sample B Female 85.4
Sample C Male 108.0
Sample D Male 72.3
Midbrain
nTPM: 102.3
Samples: 4

Max nTPM: 131.4
Min nTPM: 85.8
Sample A Female 131.4
Sample B Female 97.8
Sample C Male 94.2
Sample D Male 85.8
Periaqueductal gray
nTPM: 83.5
Samples: 3

Max nTPM: 94.8
Min nTPM: 74.6
Sample B Female 81.1
Sample C Male 94.8
Sample D Male 74.6
Superior colliculi
nTPM: 102.1
Samples: 4

Max nTPM: 126.3
Min nTPM: 82.2
Sample A Female 126.3
Sample B Female 82.2
Sample C Male 107.9
Sample D Male 91.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 258.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 258.3
Samples: 4

Max nTPM: 285.2
Min nTPM: 224.1
Sample A Male 274.3
Sample B Male 249.6
Sample C Female 224.1
Sample D Female 285.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
69080020 Antisense, RP_050324_01_D10, Mouse strain C57BL/6J (56 days, male) 4.2

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