On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
2038.7
nTPM
HPA Brain:
1018.7
nTPM
GTEx:
2038.7
nTPM
FANTOM5:
246.2
Scaled Tags Per Million
Mouse:
237.8
nTPM
Pig:
447.7
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
47811
Sample
Intensity
Spinal cord_01
76507
Spinal cord_02
74434
Spinal cord_03
46165
Spinal cord_04
75345
Spinal cord_05
42220
Spinal cord_06
44854
Spinal cord_07
49457
Spinal cord_08
38691
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1018.7
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 901.2
2734
Male, age 80, both hemispheres
963.6
2193
Male, age 75, both hemispheres
929.3
2819
Male, age 47, both hemispheres
869.5
2818
Female, age 79, both hemispheres
842.6
Cervical spinal cord, central gray nTPM: 775.7
1981
Female, age 72, midline
1001.6
2565
Male, age 75, midline
864.0
2048
Male, age 55, midline
712.5
2194
Female, age 79, both hemispheres
689.7
2816
Male, age 47, midline
610.7
Cervical spinal cord, dorsal horn nTPM: 806.9
2173
Female, age 72, unknown
1027.0
2069
Male, age 47, both hemispheres
1005.7
2296
Male, age 66, both hemispheres
863.0
1877
Male, age 55, unknown
788.0
2721
Male, age 90, both hemispheres
597.2
2297
Male, age 75, both hemispheres
560.5
Cervical spinal cord, ventral horn nTPM: 1018.7
2098
Female, age 72, unknown
1299.4
2480
Male, age 75, both hemispheres
1286.6
2809
Male, age 90, both hemispheres
1248.1
2295
Male, age 66, both hemispheres
921.9
2068
Male, age 55, unknown
851.9
2820
Female, age 79, both hemispheres
504.3
Dorsal funiculus (white matter) nTPM: 860.4
2064
Female, age 79, both hemispheres
915.6
2810
Male, age 90, both hemispheres
900.3
2817
Male, age 47, both hemispheres
868.7
2812
Male, age 66, both hemispheres
820.8
2128
Male, age 75, both hemispheres
796.7
Lateral funiculus (white matter) nTPM: 939.2
2094
Female, age 79, both hemispheres
978.2
2294
Male, age 66, both hemispheres
940.1
2192
Male, age 75, both hemispheres
923.5
2099
Male, age 90, both hemispheres
914.8
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2038.7
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 2038.7
Samples: 204
Max nTPM: 4805.7
Min nTPM: 902.7
Std nTPM: 617.2
Median nTPM: 1943.6
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
4805.7
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
3966.1
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
3666.6
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
3638.1
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
3436.6
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
3372.0
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
3311.3
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
3284.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
3194.1
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
3175.6
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
3167.8
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
3167.4
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
3158.4
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
3124.6
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
3098.5
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
3077.4
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
2960.3
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
2900.7
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
2879.3
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
2861.1
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
2850.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
2819.4
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
2812.1
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
2803.7
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
2776.8
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
2759.0
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
2741.6
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
2733.6
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
2732.4
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
2698.5
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
2698.1
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
2695.3
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
2671.4
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
2640.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
2640.4
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
2614.5
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
2600.4
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
2589.1
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
2566.5
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
2543.0
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
2496.4
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
2479.0
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
2478.6
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
2443.8
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
2415.1
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
2412.1
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
2403.6
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
2393.1
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
2387.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
2382.8
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
2374.8
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
2367.8
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
2346.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
2325.5
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
2319.2
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
2315.0
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
2312.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
2311.5
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
2305.2
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
2286.4
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
2276.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
2271.7
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
2265.7
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
2264.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
2250.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
2243.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
2223.0
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
2192.5
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
2191.6
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
2187.3
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
2162.8
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
2154.7
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
2151.1
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
2147.9
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
2140.5
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
2132.7
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
2131.1
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
2128.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
2128.0
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
2123.5
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
2118.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
2116.7
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
2101.6
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
2094.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
2090.1
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
2088.8
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
2083.3
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
2077.7
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
2069.9
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
2062.2
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
2057.5
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
2043.4
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
2035.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
2031.3
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
2029.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
2025.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
2013.4
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
2010.0
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
2004.5
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
2003.3
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
1971.4
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
1947.1
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
1940.1
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
1915.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
1913.9
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
1912.0
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
1911.6
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
1910.0
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
1907.3
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
1892.1
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
1888.1
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
1886.8
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
1881.8
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
1871.4
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
1868.9
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
1865.6
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
1864.4
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
1852.8
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
1839.3
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
1836.3
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
1829.7
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
1829.2
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
1819.9
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
1799.4
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
1788.0
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
1776.4
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
1774.6
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
1769.2
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
1764.9
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
1753.3
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
1743.0
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
1742.6
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
1740.0
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
1732.0
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
1723.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
1721.0
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
1707.3
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
1682.6
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
1679.0
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
1674.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
1660.7
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
1660.7
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
1633.0
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
1628.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
1621.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
1613.1
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
1611.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
1610.6
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
1610.0
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
1607.6
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
1585.9
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
1585.2
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
1577.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
1572.8
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
1563.3
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
1562.4
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
1560.1
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
1558.2
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
1555.4
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
1545.3
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
1542.4
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
1525.1
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
1520.1
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
1516.0
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
1514.0
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
1507.9
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
1486.0
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
1484.0
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
1480.6
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
1476.0
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
1466.6
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
1458.3
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
1449.2
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
1449.1
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
1434.8
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
1413.8
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
1401.3
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
1400.8
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
1400.0
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
1389.9
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
1385.8
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
1374.5
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
1356.6
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
1339.9
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
1336.5
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
1323.4
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
1323.3
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
1322.3
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
1305.6
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
1276.5
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
1265.9
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
1250.9
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
1245.6
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
1205.4
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
1199.1
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
1181.2
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
1145.8
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
1111.5
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
1089.7
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
1059.0
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
1040.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
1039.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
933.0
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
902.7
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
447.7
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 447.7
Samples: 4
Max nTPM: 727.5
Min nTPM: 279.3
Sample A
Female
279.3
Sample B
Female
456.0
Sample C
Male
727.5
Sample D
Male
328.1
Ventral spinal cord nTPM: 375.7
Samples: 4
Max nTPM: 481.7
Min nTPM: 294.2
Sample A
Female
294.2
Sample B
Female
377.9
Sample C
Male
481.7
Sample D
Male
349.0
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
237.8
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 237.8
Samples: 4
Max nTPM: 261.6
Min nTPM: 207.0
Sample A
261.6
Sample B
207.0
Sample C
227.6
Sample D
255.1
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The Human Protein Atlas project is funded
