A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4904.8
nTPM
Monaco:
1234.3
nTPM
Schmiedel:
5119.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4904.8
HPA sample
nTPM
Memory B-cell nTPM: 4904.8
Samples: 6
Max nTPM: 6147.2
Min nTPM: 4033.6
P10809_1017
4033.6
P10809_1025
4910.5
P10809_1044
6147.2
P10809_1063
4594.9
P10809_1092
4403.2
P10809_1105
5339.5
Naive B-cell nTPM: 4604.1
Samples: 6
Max nTPM: 5299.9
Min nTPM: 4044.8
P10809_1011
4044.8
P10809_1029
4353.7
P10809_1048
5299.9
P10809_1067
4650.1
P10809_1091
4073.0
P10809_1104
5203.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1234.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 1234.3
Samples: 4
Max nTPM: 2178.4
Min nTPM: 342.7
RHH5310_R3677
1080.8
RHH5218_R3590
342.7
RHH5247_R3619
2178.4
RHH5276_R3648
1335.3
Naive B-cell nTPM: 1080.6
Samples: 4
Max nTPM: 1694.0
Min nTPM: 580.7
RHH5308_R3675
1226.7
RHH5216_R3588
580.7
RHH5245_R3617
1694.0
RHH5274_R3646
820.9
Non-switched memory B-cell nTPM: 900.3
Samples: 4
Max nTPM: 1320.7
Min nTPM: 475.8
RHH5309_R3676
1222.7
RHH5217_R3589
475.8
RHH5246_R3618
581.8
RHH5275_R3647
1320.7
Plasmablast nTPM: 868.8
Samples: 4
Max nTPM: 1125.3
Min nTPM: 544.0
RHH5312_R3679
1125.3
RHH5220_R3592
544.0
RHH5249_R3621
835.7
RHH5278_R3650
970.0
Switched memory B-cell nTPM: 803.7
Samples: 4
Max nTPM: 1135.9
Min nTPM: 470.8
RHH5311_R3678
1135.9
RHH5219_R3591
639.1
RHH5248_R3620
470.8
RHH5277_R3649
969.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5119.3
Schmiedel sample id
TPM
Naive B-cell TPM: 5119.3
Samples: 91
Max TPM: 6433.0
Min TPM: 2263.8
B_CELL_NAIVE_1
6433.0
B_CELL_NAIVE_2
6431.7
B_CELL_NAIVE_3
6369.9
B_CELL_NAIVE_4
6255.7
B_CELL_NAIVE_5
6144.6
B_CELL_NAIVE_6
6137.3
B_CELL_NAIVE_7
6134.7
B_CELL_NAIVE_8
6116.0
B_CELL_NAIVE_9
5932.6
B_CELL_NAIVE_10
5911.3
B_CELL_NAIVE_11
5910.5
B_CELL_NAIVE_12
5904.5
B_CELL_NAIVE_13
5898.2
B_CELL_NAIVE_14
5885.1
B_CELL_NAIVE_15
5878.4
B_CELL_NAIVE_16
5877.4
B_CELL_NAIVE_17
5859.3
B_CELL_NAIVE_18
5853.8
B_CELL_NAIVE_19
5794.5
B_CELL_NAIVE_20
5740.8
B_CELL_NAIVE_21
5721.0
B_CELL_NAIVE_22
5710.4
B_CELL_NAIVE_23
5705.6
B_CELL_NAIVE_24
5664.1
B_CELL_NAIVE_25
5633.6
B_CELL_NAIVE_26
5626.6
B_CELL_NAIVE_27
5621.1
B_CELL_NAIVE_28
5611.0
B_CELL_NAIVE_29
5605.0
B_CELL_NAIVE_30
5582.0
B_CELL_NAIVE_31
5568.9
B_CELL_NAIVE_32
5565.2
B_CELL_NAIVE_33
5554.4
B_CELL_NAIVE_34
5496.7
B_CELL_NAIVE_35
5476.6
B_CELL_NAIVE_36
5456.9
B_CELL_NAIVE_37
5443.0
B_CELL_NAIVE_38
5391.4
B_CELL_NAIVE_39
5379.5
B_CELL_NAIVE_40
5376.9
B_CELL_NAIVE_41
5372.8
B_CELL_NAIVE_42
5363.1
B_CELL_NAIVE_43
5346.9
B_CELL_NAIVE_44
5345.1
B_CELL_NAIVE_45
5302.3
B_CELL_NAIVE_46
5287.6
B_CELL_NAIVE_47
5277.7
B_CELL_NAIVE_48
5264.6
B_CELL_NAIVE_49
5239.6
B_CELL_NAIVE_50
5177.2
B_CELL_NAIVE_51
5169.1
B_CELL_NAIVE_52
5168.5
B_CELL_NAIVE_53
5168.0
B_CELL_NAIVE_54
5111.4
B_CELL_NAIVE_55
5084.4
B_CELL_NAIVE_56
5066.9
B_CELL_NAIVE_57
5027.4
B_CELL_NAIVE_58
4999.5
B_CELL_NAIVE_59
4946.2
B_CELL_NAIVE_60
4942.5
B_CELL_NAIVE_61
4933.7
B_CELL_NAIVE_62
4880.9
B_CELL_NAIVE_63
4874.9
B_CELL_NAIVE_64
4860.5
B_CELL_NAIVE_65
4860.1
B_CELL_NAIVE_66
4797.0
B_CELL_NAIVE_67
4738.4
B_CELL_NAIVE_68
4709.3
B_CELL_NAIVE_69
4707.5
B_CELL_NAIVE_70
4696.4
B_CELL_NAIVE_71
4668.9
B_CELL_NAIVE_72
4665.1
B_CELL_NAIVE_73
4661.1
B_CELL_NAIVE_74
4627.4
B_CELL_NAIVE_75
4588.8
B_CELL_NAIVE_76
4543.6
B_CELL_NAIVE_77
4472.5
B_CELL_NAIVE_78
4428.0
B_CELL_NAIVE_79
4425.1
B_CELL_NAIVE_80
4351.9
B_CELL_NAIVE_81
4312.9
B_CELL_NAIVE_82
4291.5
B_CELL_NAIVE_83
4110.4
B_CELL_NAIVE_84
3882.0
B_CELL_NAIVE_85
3376.0
B_CELL_NAIVE_86
3363.5
B_CELL_NAIVE_87
3094.9
B_CELL_NAIVE_88
2935.0
B_CELL_NAIVE_89
2794.4
B_CELL_NAIVE_90
2617.4
B_CELL_NAIVE_91
2263.8
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.