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BETA
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  • RPS11
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:4904.8 nTPM
Monaco:1234.3 nTPM
Schmiedel:5119.3 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

4904.8
HPA sample nTPM
Memory B-cell
nTPM: 4904.8
Samples: 6

Max nTPM: 6147.2
Min nTPM: 4033.6
P10809_1017 4033.6
P10809_1025 4910.5
P10809_1044 6147.2
P10809_1063 4594.9
P10809_1092 4403.2
P10809_1105 5339.5
Naive B-cell
nTPM: 4604.1
Samples: 6

Max nTPM: 5299.9
Min nTPM: 4044.8
P10809_1011 4044.8
P10809_1029 4353.7
P10809_1048 5299.9
P10809_1067 4650.1
P10809_1091 4073.0
P10809_1104 5203.3

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

1234.3
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 1234.3
Samples: 4

Max nTPM: 2178.4
Min nTPM: 342.7
RHH5310_R3677 1080.8
RHH5218_R3590 342.7
RHH5247_R3619 2178.4
RHH5276_R3648 1335.3
Naive B-cell
nTPM: 1080.6
Samples: 4

Max nTPM: 1694.0
Min nTPM: 580.7
RHH5308_R3675 1226.7
RHH5216_R3588 580.7
RHH5245_R3617 1694.0
RHH5274_R3646 820.9
Non-switched memory B-cell
nTPM: 900.3
Samples: 4

Max nTPM: 1320.7
Min nTPM: 475.8
RHH5309_R3676 1222.7
RHH5217_R3589 475.8
RHH5246_R3618 581.8
RHH5275_R3647 1320.7
Plasmablast
nTPM: 868.8
Samples: 4

Max nTPM: 1125.3
Min nTPM: 544.0
RHH5312_R3679 1125.3
RHH5220_R3592 544.0
RHH5249_R3621 835.7
RHH5278_R3650 970.0
Switched memory B-cell
nTPM: 803.7
Samples: 4

Max nTPM: 1135.9
Min nTPM: 470.8
RHH5311_R3678 1135.9
RHH5219_R3591 639.1
RHH5248_R3620 470.8
RHH5277_R3649 969.0

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

5119.3
Schmiedel sample id TPM
Naive B-cell
TPM: 5119.3
Samples: 91

Max TPM: 6433.0
Min TPM: 2263.8
B_CELL_NAIVE_1 6433.0
B_CELL_NAIVE_2 6431.7
B_CELL_NAIVE_3 6369.9
B_CELL_NAIVE_4 6255.7
B_CELL_NAIVE_5 6144.6
B_CELL_NAIVE_6 6137.3
B_CELL_NAIVE_7 6134.7
B_CELL_NAIVE_8 6116.0
B_CELL_NAIVE_9 5932.6
B_CELL_NAIVE_10 5911.3
B_CELL_NAIVE_11 5910.5
B_CELL_NAIVE_12 5904.5
B_CELL_NAIVE_13 5898.2
B_CELL_NAIVE_14 5885.1
B_CELL_NAIVE_15 5878.4
B_CELL_NAIVE_16 5877.4
B_CELL_NAIVE_17 5859.3
B_CELL_NAIVE_18 5853.8
B_CELL_NAIVE_19 5794.5
B_CELL_NAIVE_20 5740.8
B_CELL_NAIVE_21 5721.0
B_CELL_NAIVE_22 5710.4
B_CELL_NAIVE_23 5705.6
B_CELL_NAIVE_24 5664.1
B_CELL_NAIVE_25 5633.6
B_CELL_NAIVE_26 5626.6
B_CELL_NAIVE_27 5621.1
B_CELL_NAIVE_28 5611.0
B_CELL_NAIVE_29 5605.0
B_CELL_NAIVE_30 5582.0
B_CELL_NAIVE_31 5568.9
B_CELL_NAIVE_32 5565.2
B_CELL_NAIVE_33 5554.4
B_CELL_NAIVE_34 5496.7
B_CELL_NAIVE_35 5476.6
B_CELL_NAIVE_36 5456.9
B_CELL_NAIVE_37 5443.0
B_CELL_NAIVE_38 5391.4
B_CELL_NAIVE_39 5379.5
B_CELL_NAIVE_40 5376.9
B_CELL_NAIVE_41 5372.8
B_CELL_NAIVE_42 5363.1
B_CELL_NAIVE_43 5346.9
B_CELL_NAIVE_44 5345.1
B_CELL_NAIVE_45 5302.3
B_CELL_NAIVE_46 5287.6
B_CELL_NAIVE_47 5277.7
B_CELL_NAIVE_48 5264.6
B_CELL_NAIVE_49 5239.6
B_CELL_NAIVE_50 5177.2
B_CELL_NAIVE_51 5169.1
B_CELL_NAIVE_52 5168.5
B_CELL_NAIVE_53 5168.0
B_CELL_NAIVE_54 5111.4
B_CELL_NAIVE_55 5084.4
B_CELL_NAIVE_56 5066.9
B_CELL_NAIVE_57 5027.4
B_CELL_NAIVE_58 4999.5
B_CELL_NAIVE_59 4946.2
B_CELL_NAIVE_60 4942.5
B_CELL_NAIVE_61 4933.7
B_CELL_NAIVE_62 4880.9
B_CELL_NAIVE_63 4874.9
B_CELL_NAIVE_64 4860.5
B_CELL_NAIVE_65 4860.1
B_CELL_NAIVE_66 4797.0
B_CELL_NAIVE_67 4738.4
B_CELL_NAIVE_68 4709.3
B_CELL_NAIVE_69 4707.5
B_CELL_NAIVE_70 4696.4
B_CELL_NAIVE_71 4668.9
B_CELL_NAIVE_72 4665.1
B_CELL_NAIVE_73 4661.1
B_CELL_NAIVE_74 4627.4
B_CELL_NAIVE_75 4588.8
B_CELL_NAIVE_76 4543.6
B_CELL_NAIVE_77 4472.5
B_CELL_NAIVE_78 4428.0
B_CELL_NAIVE_79 4425.1
B_CELL_NAIVE_80 4351.9
B_CELL_NAIVE_81 4312.9
B_CELL_NAIVE_82 4291.5
B_CELL_NAIVE_83 4110.4
B_CELL_NAIVE_84 3882.0
B_CELL_NAIVE_85 3376.0
B_CELL_NAIVE_86 3363.5
B_CELL_NAIVE_87 3094.9
B_CELL_NAIVE_88 2935.0
B_CELL_NAIVE_89 2794.4
B_CELL_NAIVE_90 2617.4
B_CELL_NAIVE_91 2263.8
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