A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2107.1
nTPM
Monaco:
609.8
nTPM
Schmiedel:
2937.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2107.1
HPA sample
nTPM
Classical monocyte nTPM: 2107.1
Samples: 6
Max nTPM: 3583.6
Min nTPM: 1479.1
P10809_1003
3583.6
P10809_1020
1617.1
P10809_1039
1971.3
P10809_1058
1761.4
P10809_1080
1479.1
P10809_1107
2230.1
Intermediate monocyte nTPM: 1812.3
Samples: 6
Max nTPM: 2650.0
Min nTPM: 1147.2
P10809_1004
1611.1
P10809_1023
2022.9
P10809_1042
1938.5
P10809_1061
1147.2
P10809_1081
1504.0
P10809_1108
2650.0
Non-classical monocyte nTPM: 1569.6
Samples: 5
Max nTPM: 2138.1
Min nTPM: 1166.1
P10809_1005
1763.5
P10809_1053
1524.0
P10809_1072
1166.1
P10809_1082
1256.5
P10809_1109
2138.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
609.8
Monaco sample
nTPM
Classical monocyte nTPM: 422.8
Samples: 4
Max nTPM: 535.2
Min nTPM: 346.4
RHH5313_R3680
535.2
RHH5221_R3593
414.8
RHH5250_R3622
346.4
RHH5279_R3651
394.8
Intermediate monocyte nTPM: 609.8
Samples: 4
Max nTPM: 720.5
Min nTPM: 436.3
RHH5314_R3681
637.3
RHH5222_R3594
720.5
RHH5251_R3623
645.2
RHH5280_R3652
436.3
Non-classical monocyte nTPM: 427.5
Samples: 4
Max nTPM: 517.4
Min nTPM: 275.5
RHH5315_R3682
517.4
RHH5223_R3595
485.2
RHH5252_R3624
431.9
RHH5281_R3653
275.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2937.9
Schmiedel sample id
TPM
Classical monocyte TPM: 2937.9
Samples: 91
Max TPM: 3562.7
Min TPM: 2082.9
MONOCYTES_1
3562.7
MONOCYTES_2
3453.1
MONOCYTES_3
3347.5
MONOCYTES_4
3344.6
MONOCYTES_5
3333.5
MONOCYTES_6
3329.8
MONOCYTES_7
3314.2
MONOCYTES_8
3292.0
MONOCYTES_9
3277.8
MONOCYTES_10
3244.8
MONOCYTES_11
3204.1
MONOCYTES_12
3203.0
MONOCYTES_13
3170.8
MONOCYTES_14
3167.5
MONOCYTES_15
3165.4
MONOCYTES_16
3165.1
MONOCYTES_17
3162.3
MONOCYTES_18
3152.5
MONOCYTES_19
3137.9
MONOCYTES_20
3123.4
MONOCYTES_21
3120.5
MONOCYTES_22
3120.3
MONOCYTES_23
3113.9
MONOCYTES_24
3113.6
MONOCYTES_25
3111.8
MONOCYTES_26
3098.9
MONOCYTES_27
3089.5
MONOCYTES_28
3079.9
MONOCYTES_29
3079.3
MONOCYTES_30
3059.6
MONOCYTES_31
3059.2
MONOCYTES_32
3058.0
MONOCYTES_33
3056.5
MONOCYTES_34
3055.7
MONOCYTES_35
3049.9
MONOCYTES_36
3023.7
MONOCYTES_37
3020.6
MONOCYTES_38
3016.5
MONOCYTES_39
3013.5
MONOCYTES_40
3002.9
MONOCYTES_41
3002.9
MONOCYTES_42
2998.6
MONOCYTES_43
2985.6
MONOCYTES_44
2984.3
MONOCYTES_45
2983.1
MONOCYTES_46
2977.4
MONOCYTES_47
2977.2
MONOCYTES_48
2976.3
MONOCYTES_49
2975.0
MONOCYTES_50
2972.8
MONOCYTES_51
2970.1
MONOCYTES_52
2966.3
MONOCYTES_53
2958.9
MONOCYTES_54
2955.0
MONOCYTES_55
2947.2
MONOCYTES_56
2942.1
MONOCYTES_57
2932.9
MONOCYTES_58
2921.9
MONOCYTES_59
2917.0
MONOCYTES_60
2914.4
MONOCYTES_61
2904.1
MONOCYTES_62
2898.5
MONOCYTES_63
2887.2
MONOCYTES_64
2886.1
MONOCYTES_65
2877.5
MONOCYTES_66
2871.2
MONOCYTES_67
2855.6
MONOCYTES_68
2831.2
MONOCYTES_69
2818.6
MONOCYTES_70
2817.0
MONOCYTES_71
2780.2
MONOCYTES_72
2744.4
MONOCYTES_73
2735.5
MONOCYTES_74
2721.7
MONOCYTES_75
2703.6
MONOCYTES_76
2674.9
MONOCYTES_77
2667.7
MONOCYTES_78
2636.5
MONOCYTES_79
2569.7
MONOCYTES_80
2556.5
MONOCYTES_81
2545.6
MONOCYTES_82
2540.3
MONOCYTES_83
2519.4
MONOCYTES_84
2452.4
MONOCYTES_85
2413.6
MONOCYTES_86
2395.6
MONOCYTES_87
2339.5
MONOCYTES_88
2326.1
MONOCYTES_89
2287.4
MONOCYTES_90
2250.7
MONOCYTES_91
2082.9
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Non-classical monocyte TPM: 2302.9
Samples: 90
Max TPM: 3212.1
Min TPM: 1474.5
M2_1
3212.1
M2_2
2907.1
M2_3
2884.3
M2_4
2777.2
M2_5
2650.9
M2_6
2592.4
M2_7
2589.4
M2_8
2580.4
M2_9
2569.9
M2_10
2569.6
M2_11
2555.1
M2_12
2552.0
M2_13
2543.2
M2_14
2542.2
M2_15
2537.2
M2_16
2535.0
M2_17
2520.5
M2_18
2518.6
M2_19
2516.7
M2_20
2512.8
M2_21
2508.5
M2_22
2504.6
M2_23
2498.3
M2_24
2482.7
M2_25
2471.2
M2_26
2462.9
M2_27
2460.1
M2_28
2428.9
M2_29
2422.5
M2_30
2418.0
M2_31
2415.5
M2_32
2411.3
M2_33
2410.3
M2_34
2408.9
M2_35
2403.6
M2_36
2401.2
M2_37
2385.2
M2_38
2384.9
M2_39
2376.2
M2_40
2370.5
M2_41
2365.9
M2_42
2365.3
M2_43
2357.9
M2_44
2351.5
M2_45
2350.6
M2_46
2344.3
M2_47
2342.4
M2_48
2340.3
M2_49
2339.8
M2_50
2323.6
M2_51
2302.4
M2_52
2296.8
M2_53
2294.1
M2_54
2293.5
M2_55
2292.2
M2_56
2276.6
M2_57
2275.7
M2_58
2259.5
M2_59
2253.6
M2_60
2248.1
M2_61
2242.6
M2_62
2233.0
M2_63
2230.5
M2_64
2223.8
M2_65
2203.8
M2_66
2200.5
M2_67
2193.2
M2_68
2188.5
M2_69
2162.1
M2_70
2154.4
M2_71
2154.0
M2_72
2146.2
M2_73
2119.9
M2_74
2089.9
M2_75
2081.4
M2_76
2055.2
M2_77
2010.3
M2_78
1994.1
M2_79
1973.4
M2_80
1934.2
M2_81
1866.8
M2_82
1819.0
M2_83
1813.5
M2_84
1808.7
M2_85
1762.7
M2_86
1707.0
M2_87
1639.5
M2_88
1629.7
M2_89
1580.2
M2_90
1474.5
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