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SH3BGRL3
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  • SH3BGRL3
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:294.4 nTPM
HPA Brain:167.0 nTPM
GTEx:294.4 nTPM
FANTOM5:243.6 Scaled Tags Per Million
Pig:541.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

167.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 156.9
1981 Female, age 72, midline 181.0
2194 Female, age 79, both hemispheres 162.7
2565 Male, age 75, midline 157.4
2816 Male, age 47, midline 147.1
2048 Male, age 55, midline 136.6
Cervical spinal cord, dorsal horn
nTPM: 154.5
2173 Female, age 72, unknown 172.9
2721 Male, age 90, both hemispheres 158.9
2069 Male, age 47, both hemispheres 154.4
1877 Male, age 55, unknown 150.0
2296 Male, age 66, both hemispheres 146.7
2297 Male, age 75, both hemispheres 143.9
Cervical spinal cord, ventral horn
nTPM: 167.0
2098 Female, age 72, unknown 201.7
2480 Male, age 75, both hemispheres 184.4
2809 Male, age 90, both hemispheres 171.4
2295 Male, age 66, both hemispheres 158.3
2068 Male, age 55, unknown 148.6
2820 Female, age 79, both hemispheres 137.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

294.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 294.4
Samples: 204

Max nTPM: 715.9
Min nTPM: 141.3
Std nTPM: 91.5
Median nTPM: 280.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 715.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 684.4
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 629.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 591.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 544.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 537.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 524.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 505.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 497.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 474.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 471.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 467.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 444.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 437.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 435.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 426.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 425.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 411.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 396.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 391.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 389.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 386.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 385.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 385.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 381.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 378.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 377.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 376.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 373.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 373.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 369.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 367.7
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 367.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 363.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 363.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 363.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 361.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 356.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 353.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 346.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 345.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 345.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 344.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 343.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 342.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 342.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 341.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 340.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 339.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 334.9
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 332.9
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 325.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 325.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 325.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 324.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 323.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 321.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 321.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 319.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 318.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 315.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 315.5
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 315.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 313.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 313.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 310.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 310.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 309.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 309.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 308.3
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 306.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 305.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 305.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 304.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 301.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 301.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 301.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 299.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 297.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 296.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 294.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 294.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 293.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 293.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 293.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 292.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 292.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 291.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 291.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 289.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 288.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 288.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 287.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 287.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 285.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 284.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 284.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 283.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 283.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 282.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 281.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 280.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 280.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 280.2
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 279.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 278.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 278.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 278.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 277.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 276.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 274.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 273.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 273.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 271.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 271.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 270.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 269.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 269.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 267.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 267.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 266.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 266.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 265.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 265.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 264.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 261.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 261.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 260.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 260.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 259.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 257.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 257.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 254.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 254.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 254.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 253.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 252.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 251.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 251.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 250.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 248.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 248.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 247.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 244.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 242.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 240.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 239.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 238.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 235.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 233.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 233.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 232.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 232.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 230.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 230.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 229.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 228.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 227.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 227.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 227.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 226.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 224.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 223.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 222.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 221.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 221.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 220.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 216.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 215.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 215.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 211.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 211.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 209.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 208.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 206.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 204.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 203.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 201.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 200.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 199.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 199.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 197.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 197.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 195.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 194.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 194.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 194.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 193.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 191.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 190.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 186.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 186.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 184.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 184.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 184.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 183.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 181.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 179.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 177.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 171.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 171.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 165.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 152.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 141.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

243.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 243.6
FF:10159-103A6 76 years, female 254.9
FF:10181-103D1 60 years, female 232.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

541.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 499.4
Samples: 4

Max nTPM: 560.5
Min nTPM: 401.8
Sample A Female 401.8
Sample B Female 529.4
Sample C Male 560.5
Sample D Male 506.0
Ventral spinal cord
nTPM: 541.8
Samples: 4

Max nTPM: 600.4
Min nTPM: 478.2
Sample A Female 523.5
Sample B Female 478.2
Sample C Male 600.4
Sample D Male 565.2

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