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  • SH3BGRL3
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:287.4 nTPM
HPA Brain:149.6 nTPM
GTEx:287.4 nTPM
FANTOM5:214.5 Scaled Tags Per Million
Pig:219.9 nTPM
Mouse:269.7 nTPM
Allen mouse:10.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

149.6
Sample id Sample description nTPM
Amygdala
nTPM: 149.6
2814 Male, age 76, right hemisphere 176.9
1987 Female, age 91, left hemisphere 153.4
2695 Female, age 67, right hemisphere 150.2
2514 Male, age 75, right hemisphere 142.2
2517 Female, age 94, left hemisphere 125.2
Basal amygdala
nTPM: 139.9
2110 Male, age 80, left hemisphere 199.5
1955 Male, age 76, both hemispheres 151.2
2243 Female, age 91, right hemisphere 139.2
2685 Female, age 94, left hemisphere 124.1
2609 Male, age 75, right hemisphere 123.5
2827 Female, age 67, right hemisphere 102.1
Central amygdala
nTPM: 146.2
2239 Male, age 80, left hemisphere 181.4
1905 Male, age 76, both hemispheres 162.9
2826 Female, age 94, left hemisphere 138.1
2515 Male, age 75, right hemisphere 130.4
2701 Female, age 91, right hemisphere 117.9
Corticomedial amygdala
nTPM: 136.6
2240 Male, age 76, both hemispheres 159.9
2242 Female, age 91, right hemisphere 148.2
2829 Male, age 80, left hemisphere 135.6
2429 Female, age 94, left hemisphere 135.2
2535 Female, age 67, right hemisphere 123.4
2428 Male, age 75, right hemisphere 117.1
Lateral amygdala
nTPM: 136.3
1883 Male, age 76, both hemispheres 171.6
2256 Male, age 80, left hemisphere 136.6
2534 Female, age 94, left hemisphere 131.2
2516 Male, age 75, right hemisphere 130.4
2255 Female, age 91, right hemisphere 124.6
2830 Female, age 67, right hemisphere 123.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

287.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 287.4
Samples: 181

Max nTPM: 778.2
Min nTPM: 154.9
Std nTPM: 88.0
Median nTPM: 267.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 778.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 696.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 615.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 549.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 474.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 451.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 448.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 441.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 433.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 421.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 415.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 413.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 405.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 404.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 400.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 399.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 394.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 393.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 386.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 385.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 379.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 379.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 373.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 365.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 365.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 365.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 359.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 357.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 355.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 353.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 350.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 348.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 348.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 347.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 345.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 345.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 343.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 343.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 342.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 340.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 339.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 339.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 332.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 331.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 328.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 327.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 326.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 326.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 325.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 320.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 319.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 319.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 318.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 318.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 317.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 317.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 314.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 314.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 313.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 312.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 311.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 308.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 303.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 301.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 300.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 300.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 300.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 297.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 294.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 292.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 291.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 286.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 284.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 284.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 283.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 277.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 276.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 276.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 274.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 274.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 273.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 273.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 273.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 273.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 272.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 272.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 271.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 270.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 268.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 267.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 267.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 267.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 267.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 267.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 267.3
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 265.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 265.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 265.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 265.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 263.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 262.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 262.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 258.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 258.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 257.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 257.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 257.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 256.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 256.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 255.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 255.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 254.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 250.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 250.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 247.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 247.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 246.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 245.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 245.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 244.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 243.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 242.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 241.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 241.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 239.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 238.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 238.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 238.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 236.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 234.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 234.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 233.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 233.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 232.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 231.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 231.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 227.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 224.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 223.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 222.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 220.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 219.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 218.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 216.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 216.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 215.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 215.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 214.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 213.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 213.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 213.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 212.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 211.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 210.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 209.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 208.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 208.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 207.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 205.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 205.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 204.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 203.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 202.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 201.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 201.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 196.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 195.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 192.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 191.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 190.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 190.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 189.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 187.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 186.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 184.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 182.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 172.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 170.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 169.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 161.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 154.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

214.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 214.5
FF:10151-102I7 76 years, female 214.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

219.9
Pig sample Sample description nTPM
Amygdala
nTPM: 219.9
Samples: 4

Max nTPM: 300.1
Min nTPM: 165.0
Sample A Female 300.1
Sample B Female 232.5
Sample C Male 182.0
Sample D Male 165.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

269.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 269.7
Samples: 4

Max nTPM: 294.5
Min nTPM: 256.1
Sample A Male 261.2
Sample B Male 267.1
Sample C Female 294.5
Sample D Female 256.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.1
69873708 Antisense, RP_050512_01_G10, Mouse strain C57BL/6J (56 days, male) 10.1

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