On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
317.6
nTPM
HPA Brain:
260.8
nTPM
GTEx:
317.6
nTPM
FANTOM5:
285.7
Scaled Tags Per Million
Macaque:
220.4
nTPM
Mouse:
126.4
nTPM
Rat:
66.7
nTPM
Pig:
409.1
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
260.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 148.6
2019
Male, age 18, unknown
203.5
2411
Female, age 72, unknown
169.3
2666
Male, age 74, left hemisphere
165.2
2219
Male, age 76, both hemispheres
164.1
2828
Female, age 72, unknown
151.9
1830
Male, age 51, unknown
139.1
1833
Male, age 53, unknown
137.0
1870
Female, age 42, unknown
129.6
1827
Male, age 72, unknown
124.2
2586
Male, age 75, left hemisphere
102.1
Dorsal raphe nucleus nTPM: 175.2
2750
Male, age 76, both hemispheres
200.0
2047
Male, age 72, unknown
199.5
2298
Female, age 72, unknown
187.5
1828
Male, age 53, unknown
165.9
2016
Female, age 72, unknown
123.3
Inferior colliculus nTPM: 128.3
1890
Male, age 53, unknown
142.0
2097
Female, age 72, unknown
142.0
2849
Male, age 72, unknown
117.2
1848
Female, age 42, unknown
111.8
Median raphe nucleus nTPM: 260.8
2220
Male, age 76, midline
260.8
Periaquaductal grey, anterior nTPM: 138.6
1795
Male, age 51, unknown
151.3
1947
Male, age 18, unknown
135.0
2502
Female, age 75, unknown
129.4
Periaquaductal grey, dorsal nTPM: 129.0
2850
Male, age 76, both hemispheres
167.1
2464
Female, age 72, unknown
120.3
1831
Male, age 72, unknown
116.5
1840
Male, age 53, unknown
112.1
Periaquaductal grey, lateral nTPM: 146.1
2272
Male, age 74, both hemispheres
200.0
2140
Male, age 76, both hemispheres
142.4
2053
Male, age 18, unknown
96.0
Pretectal area nTPM: 163.9
2007
Male, age 72, unknown
217.9
1817
Female, age 42, unknown
213.7
1944
Female, age 72, unknown
191.3
1815
Male, age 53, unknown
189.5
2273
Male, age 74, both hemispheres
174.9
1816
Male, age 51, unknown
164.4
2667
Female, age 75, unknown
162.9
2224
Female, age 72, unknown
144.5
2407
Male, age 75, both hemispheres
131.0
2825
Male, age 18, unknown
106.8
2316
Male, age 76, right hemisphere
105.7
Red nucleus nTPM: 148.7
2785
Male, age 18, unknown
204.9
1865
Male, age 51, unknown
166.6
2725
Female, age 75, unknown
160.8
2823
Male, age 76, right hemisphere
159.1
1904
Male, age 53, unknown
153.5
2503
Female, age 72, unknown
149.0
1954
Female, age 42, unknown
147.0
2769
Male, age 72, unknown
136.3
2227
Male, age 72, unknown
134.0
1821
Female, age 72, unknown
130.9
2588
Male, age 74, left hemisphere
125.7
2584
Male, age 75, left hemisphere
117.0
Substantia nigra nTPM: 218.2
1916
Female, age 42, unknown
356.7
1851
Male, age 51, unknown
260.3
2699
Male, age 18, unknown
250.2
1941
Male, age 53, unknown
241.5
2241
Male, age 72, unknown
215.1
1889
Female, age 72, unknown
208.2
2409
Female, age 72, unknown
185.5
2665
Male, age 74, both hemispheres
181.3
2590
Female, age 75, unknown
148.2
2583
Male, age 75, right hemisphere
135.2
Superior colliculus nTPM: 141.9
2668
Female, age 75, unknown
189.8
2087
Female, age 72, unknown
166.8
2587
Male, age 74, left hemisphere
163.0
1913
Female, age 42, unknown
155.1
1995
Male, age 72, unknown
143.3
2261
Male, age 18, unknown
134.7
1796
Male, age 53, unknown
132.8
1839
Male, age 51, unknown
112.3
2664
Male, age 75, both hemispheres
111.8
1895
Male, age 76, right hemisphere
109.4
Ventral tegmental area nTPM: 196.8
1915
Female, age 42, unknown
234.3
2218
Male, age 76, both hemispheres
234.1
2410
Female, age 72, unknown
218.1
2223
Female, age 72, unknown
171.7
2021
Male, age 53, unknown
162.1
1942
Male, age 51, unknown
160.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
317.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 317.6
Samples: 183
Max nTPM: 670.2
Min nTPM: 118.9
Std nTPM: 95.0
Median nTPM: 307.6
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
670.2
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
619.8
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
587.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
572.8
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
565.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
549.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
539.4
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
485.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
484.3
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
475.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
464.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
462.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
460.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
459.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
452.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
443.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
442.2
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
441.5
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
431.4
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
427.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
426.7
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
425.8
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
423.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
423.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
422.3
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
418.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
416.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
411.5
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
411.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
409.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
408.8
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
407.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
406.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
399.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
395.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
394.7
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
393.0
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
391.8
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
390.9
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
389.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
388.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
387.6
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
382.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
382.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
380.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
377.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
374.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
373.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
364.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
364.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
362.5
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
362.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
361.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
360.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
359.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
358.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
354.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
354.0
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
353.5
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
352.1
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
351.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
350.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
347.9
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
347.6
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
346.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
345.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
336.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
335.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
334.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
333.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
329.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
327.5
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
327.3
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
325.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
324.8
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
323.1
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
318.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
318.6
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
318.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
317.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
317.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
317.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
315.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
315.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
315.3
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
315.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
314.8
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
314.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
312.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
309.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
308.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
307.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
305.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
305.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
305.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
304.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
301.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
299.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
298.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
298.5
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
296.6
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
294.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
293.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
293.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
293.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
291.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
290.5
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
290.1
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
287.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
283.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
283.7
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
281.8
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
281.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
276.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
274.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
274.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
274.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
273.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
273.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
273.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
272.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
267.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
266.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
266.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
263.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
260.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
258.5
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
258.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
257.4
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
256.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
252.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
250.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
247.1
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
246.5
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
246.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
244.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
244.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
244.0
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
243.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
242.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
240.9
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
240.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
239.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
238.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
238.4
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
237.1
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
236.8
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
236.0
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
233.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
233.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
233.1
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
231.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
227.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
227.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
226.3
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
225.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
221.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
216.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
211.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
209.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
207.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
207.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
205.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
205.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
204.3
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
203.4
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
201.9
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
200.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
200.4
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
196.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
195.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
195.8
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
194.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
193.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
192.2
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
190.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
189.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
183.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
181.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
176.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
168.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
129.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
118.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
220.4
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 220.4
Samples: 1
Max nTPM: 220.4
Min nTPM: 220.4
Sample A
220.4
Midbrain nTPM: 147.2
Samples: 1
Max nTPM: 147.2
Min nTPM: 147.2
Sample A
147.2
Superior colliculi nTPM: 174.0
Samples: 1
Max nTPM: 174.0
Min nTPM: 174.0
Sample A
174.0
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
409.1
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 403.5
Samples: 3
Max nTPM: 516.1
Min nTPM: 320.7
Sample A
Female
516.1
Sample B
Female
320.7
Sample C
Male
373.7
Midbrain nTPM: 358.1
Samples: 3
Max nTPM: 460.7
Min nTPM: 296.8
Sample B
Female
460.7
Sample C
Male
316.9
Sample D
Male
296.8
Periaqueductal gray nTPM: 333.6
Samples: 3
Max nTPM: 356.9
Min nTPM: 310.1
Sample B
Female
310.1
Sample C
Male
333.9
Sample D
Male
356.9
Superior colliculi nTPM: 409.1
Samples: 4
Max nTPM: 535.2
Min nTPM: 214.7
Sample A
Female
535.2
Sample B
Female
214.7
Sample C
Male
369.6
Sample D
Male
517.0
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
126.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 126.4
Samples: 4
Max nTPM: 129.5
Min nTPM: 123.8
Sample A
129.5
Sample B
123.8
Sample C
126.6
Sample D
125.7
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
66.7
Rat sample
Sample description
nTPM
Midbrain nTPM: 66.7
Samples: 4
Max nTPM: 75.0
Min nTPM: 57.7
Sample A
75.0
Sample A
57.7
Sample A
72.0
Sample A
62.0
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The Human Protein Atlas project is funded
