A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3273.2
nTPM
Monaco:
495.3
nTPM
Schmiedel:
2859.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3273.2
HPA sample
nTPM
Memory B-cell nTPM: 3273.2
Samples: 6
Max nTPM: 3832.1
Min nTPM: 2890.3
P10809_1017
2890.3
P10809_1025
3286.3
P10809_1044
3832.1
P10809_1063
3325.0
P10809_1092
2945.1
P10809_1105
3360.1
Naive B-cell nTPM: 2823.7
Samples: 6
Max nTPM: 3513.7
Min nTPM: 2423.4
P10809_1011
2479.6
P10809_1029
2623.6
P10809_1048
3513.7
P10809_1067
2985.8
P10809_1091
2423.4
P10809_1104
2916.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
495.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 495.3
Samples: 4
Max nTPM: 839.4
Min nTPM: 160.4
RHH5310_R3677
402.8
RHH5218_R3590
160.4
RHH5247_R3619
839.4
RHH5276_R3648
578.6
Naive B-cell nTPM: 436.7
Samples: 4
Max nTPM: 646.2
Min nTPM: 152.6
RHH5308_R3675
578.7
RHH5216_R3588
152.6
RHH5245_R3617
646.2
RHH5274_R3646
369.2
Non-switched memory B-cell nTPM: 380.7
Samples: 4
Max nTPM: 596.5
Min nTPM: 206.4
RHH5309_R3676
497.2
RHH5217_R3589
222.8
RHH5246_R3618
206.4
RHH5275_R3647
596.5
Plasmablast nTPM: 303.3
Samples: 4
Max nTPM: 368.0
Min nTPM: 171.1
RHH5312_R3679
368.0
RHH5220_R3592
171.1
RHH5249_R3621
337.7
RHH5278_R3650
336.2
Switched memory B-cell nTPM: 379.2
Samples: 4
Max nTPM: 459.9
Min nTPM: 243.8
RHH5311_R3678
441.0
RHH5219_R3591
372.2
RHH5248_R3620
243.8
RHH5277_R3649
459.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2859.3
Schmiedel sample id
TPM
Naive B-cell TPM: 2859.3
Samples: 91
Max TPM: 3633.7
Min TPM: 1890.2
B_CELL_NAIVE_1
3633.7
B_CELL_NAIVE_2
3433.3
B_CELL_NAIVE_3
3404.2
B_CELL_NAIVE_4
3350.3
B_CELL_NAIVE_5
3335.7
B_CELL_NAIVE_6
3326.2
B_CELL_NAIVE_7
3309.4
B_CELL_NAIVE_8
3284.1
B_CELL_NAIVE_9
3284.1
B_CELL_NAIVE_10
3271.3
B_CELL_NAIVE_11
3249.5
B_CELL_NAIVE_12
3241.2
B_CELL_NAIVE_13
3224.1
B_CELL_NAIVE_14
3217.2
B_CELL_NAIVE_15
3196.2
B_CELL_NAIVE_16
3175.0
B_CELL_NAIVE_17
3165.1
B_CELL_NAIVE_18
3149.2
B_CELL_NAIVE_19
3128.4
B_CELL_NAIVE_20
3122.0
B_CELL_NAIVE_21
3108.2
B_CELL_NAIVE_22
3107.9
B_CELL_NAIVE_23
3075.6
B_CELL_NAIVE_24
3041.4
B_CELL_NAIVE_25
3039.6
B_CELL_NAIVE_26
3029.5
B_CELL_NAIVE_27
3023.3
B_CELL_NAIVE_28
3018.2
B_CELL_NAIVE_29
3017.1
B_CELL_NAIVE_30
3016.6
B_CELL_NAIVE_31
3015.1
B_CELL_NAIVE_32
3014.0
B_CELL_NAIVE_33
3005.0
B_CELL_NAIVE_34
3004.2
B_CELL_NAIVE_35
2980.7
B_CELL_NAIVE_36
2963.0
B_CELL_NAIVE_37
2936.9
B_CELL_NAIVE_38
2929.3
B_CELL_NAIVE_39
2928.3
B_CELL_NAIVE_40
2924.6
B_CELL_NAIVE_41
2920.2
B_CELL_NAIVE_42
2912.7
B_CELL_NAIVE_43
2907.7
B_CELL_NAIVE_44
2907.3
B_CELL_NAIVE_45
2889.7
B_CELL_NAIVE_46
2874.7
B_CELL_NAIVE_47
2871.8
B_CELL_NAIVE_48
2855.5
B_CELL_NAIVE_49
2845.0
B_CELL_NAIVE_50
2841.4
B_CELL_NAIVE_51
2834.3
B_CELL_NAIVE_52
2832.1
B_CELL_NAIVE_53
2826.7
B_CELL_NAIVE_54
2819.0
B_CELL_NAIVE_55
2814.9
B_CELL_NAIVE_56
2789.0
B_CELL_NAIVE_57
2770.3
B_CELL_NAIVE_58
2765.8
B_CELL_NAIVE_59
2759.2
B_CELL_NAIVE_60
2747.6
B_CELL_NAIVE_61
2738.4
B_CELL_NAIVE_62
2735.5
B_CELL_NAIVE_63
2735.1
B_CELL_NAIVE_64
2725.4
B_CELL_NAIVE_65
2709.3
B_CELL_NAIVE_66
2707.4
B_CELL_NAIVE_67
2685.8
B_CELL_NAIVE_68
2685.3
B_CELL_NAIVE_69
2675.7
B_CELL_NAIVE_70
2674.2
B_CELL_NAIVE_71
2669.4
B_CELL_NAIVE_72
2652.3
B_CELL_NAIVE_73
2648.4
B_CELL_NAIVE_74
2640.7
B_CELL_NAIVE_75
2633.7
B_CELL_NAIVE_76
2622.8
B_CELL_NAIVE_77
2619.1
B_CELL_NAIVE_78
2616.8
B_CELL_NAIVE_79
2592.4
B_CELL_NAIVE_80
2563.8
B_CELL_NAIVE_81
2533.6
B_CELL_NAIVE_82
2440.5
B_CELL_NAIVE_83
2384.3
B_CELL_NAIVE_84
2373.4
B_CELL_NAIVE_85
2310.1
B_CELL_NAIVE_86
2270.7
B_CELL_NAIVE_87
2175.6
B_CELL_NAIVE_88
2117.7
B_CELL_NAIVE_89
2008.2
B_CELL_NAIVE_90
1892.6
B_CELL_NAIVE_91
1890.2
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