A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1455.2
nTPM
Monaco:
296.3
nTPM
Schmiedel:
1863.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1455.2
HPA sample
nTPM
Classical monocyte nTPM: 1455.2
Samples: 6
Max nTPM: 3064.3
Min nTPM: 919.4
P10809_1003
3064.3
P10809_1020
1101.7
P10809_1039
1138.1
P10809_1058
1155.2
P10809_1080
919.4
P10809_1107
1352.7
Intermediate monocyte nTPM: 1216.7
Samples: 6
Max nTPM: 1801.1
Min nTPM: 940.3
P10809_1004
1043.2
P10809_1023
1403.8
P10809_1042
1134.0
P10809_1061
940.3
P10809_1081
977.7
P10809_1108
1801.1
Non-classical monocyte nTPM: 994.0
Samples: 5
Max nTPM: 1340.0
Min nTPM: 793.9
P10809_1005
1100.6
P10809_1053
856.6
P10809_1072
793.9
P10809_1082
878.9
P10809_1109
1340.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
296.3
Monaco sample
nTPM
Classical monocyte nTPM: 211.7
Samples: 4
Max nTPM: 275.1
Min nTPM: 154.7
RHH5313_R3680
275.1
RHH5221_R3593
154.7
RHH5250_R3622
177.1
RHH5279_R3651
240.0
Intermediate monocyte nTPM: 296.3
Samples: 4
Max nTPM: 358.0
Min nTPM: 192.9
RHH5314_R3681
358.0
RHH5222_R3594
297.4
RHH5251_R3623
337.0
RHH5280_R3652
192.9
Non-classical monocyte nTPM: 206.6
Samples: 4
Max nTPM: 292.7
Min nTPM: 91.7
RHH5315_R3682
292.7
RHH5223_R3595
185.8
RHH5252_R3624
256.0
RHH5281_R3653
91.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1863.9
Schmiedel sample id
TPM
Classical monocyte TPM: 1863.9
Samples: 91
Max TPM: 2344.0
Min TPM: 1430.0
MONOCYTES_1
2344.0
MONOCYTES_2
2285.9
MONOCYTES_3
2223.8
MONOCYTES_4
2173.2
MONOCYTES_5
2135.4
MONOCYTES_6
2087.1
MONOCYTES_7
2086.2
MONOCYTES_8
2061.4
MONOCYTES_9
2054.9
MONOCYTES_10
2052.7
MONOCYTES_11
2032.9
MONOCYTES_12
2021.6
MONOCYTES_13
2020.3
MONOCYTES_14
2017.5
MONOCYTES_15
2014.3
MONOCYTES_16
2003.7
MONOCYTES_17
1999.7
MONOCYTES_18
1968.5
MONOCYTES_19
1966.4
MONOCYTES_20
1965.8
MONOCYTES_21
1953.8
MONOCYTES_22
1942.7
MONOCYTES_23
1941.1
MONOCYTES_24
1937.4
MONOCYTES_25
1936.5
MONOCYTES_26
1931.5
MONOCYTES_27
1919.4
MONOCYTES_28
1918.0
MONOCYTES_29
1911.7
MONOCYTES_30
1908.5
MONOCYTES_31
1903.8
MONOCYTES_32
1901.1
MONOCYTES_33
1896.0
MONOCYTES_34
1893.1
MONOCYTES_35
1892.8
MONOCYTES_36
1885.8
MONOCYTES_37
1874.9
MONOCYTES_38
1872.5
MONOCYTES_39
1871.7
MONOCYTES_40
1869.6
MONOCYTES_41
1864.8
MONOCYTES_42
1863.7
MONOCYTES_43
1861.6
MONOCYTES_44
1858.1
MONOCYTES_45
1854.7
MONOCYTES_46
1853.7
MONOCYTES_47
1851.3
MONOCYTES_48
1849.2
MONOCYTES_49
1847.3
MONOCYTES_50
1846.8
MONOCYTES_51
1843.1
MONOCYTES_52
1841.9
MONOCYTES_53
1841.7
MONOCYTES_54
1841.2
MONOCYTES_55
1835.3
MONOCYTES_56
1827.7
MONOCYTES_57
1821.3
MONOCYTES_58
1819.7
MONOCYTES_59
1815.8
MONOCYTES_60
1815.6
MONOCYTES_61
1814.6
MONOCYTES_62
1808.9
MONOCYTES_63
1806.5
MONOCYTES_64
1802.5
MONOCYTES_65
1802.3
MONOCYTES_66
1796.5
MONOCYTES_67
1793.2
MONOCYTES_68
1791.8
MONOCYTES_69
1790.4
MONOCYTES_70
1784.3
MONOCYTES_71
1779.6
MONOCYTES_72
1757.9
MONOCYTES_73
1751.2
MONOCYTES_74
1749.0
MONOCYTES_75
1740.2
MONOCYTES_76
1735.5
MONOCYTES_77
1721.2
MONOCYTES_78
1717.8
MONOCYTES_79
1706.2
MONOCYTES_80
1693.6
MONOCYTES_81
1689.7
MONOCYTES_82
1683.8
MONOCYTES_83
1671.0
MONOCYTES_84
1663.6
MONOCYTES_85
1631.8
MONOCYTES_86
1627.9
MONOCYTES_87
1616.5
MONOCYTES_88
1581.6
MONOCYTES_89
1580.9
MONOCYTES_90
1560.5
MONOCYTES_91
1430.0
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Non-classical monocyte TPM: 1512.0
Samples: 90
Max TPM: 2105.2
Min TPM: 1103.7
M2_1
2105.2
M2_2
1786.6
M2_3
1757.0
M2_4
1755.1
M2_5
1744.4
M2_6
1744.3
M2_7
1743.9
M2_8
1723.6
M2_9
1704.2
M2_10
1695.9
M2_11
1682.7
M2_12
1681.2
M2_13
1672.0
M2_14
1670.2
M2_15
1667.3
M2_16
1645.6
M2_17
1642.9
M2_18
1634.7
M2_19
1627.9
M2_20
1625.4
M2_21
1611.3
M2_22
1610.9
M2_23
1610.2
M2_24
1609.8
M2_25
1605.5
M2_26
1599.5
M2_27
1598.9
M2_28
1589.5
M2_29
1587.7
M2_30
1569.4
M2_31
1568.2
M2_32
1565.7
M2_33
1539.7
M2_34
1539.3
M2_35
1531.1
M2_36
1530.4
M2_37
1521.0
M2_38
1519.6
M2_39
1519.1
M2_40
1510.4
M2_41
1508.4
M2_42
1505.0
M2_43
1503.5
M2_44
1502.0
M2_45
1499.9
M2_46
1497.2
M2_47
1494.4
M2_48
1494.2
M2_49
1494.2
M2_50
1491.1
M2_51
1488.8
M2_52
1480.1
M2_53
1470.1
M2_54
1463.1
M2_55
1461.1
M2_56
1459.8
M2_57
1457.9
M2_58
1451.1
M2_59
1450.8
M2_60
1443.3
M2_61
1440.3
M2_62
1434.2
M2_63
1433.4
M2_64
1428.2
M2_65
1425.7
M2_66
1413.3
M2_67
1411.2
M2_68
1406.1
M2_69
1404.5
M2_70
1403.3
M2_71
1403.0
M2_72
1396.8
M2_73
1381.0
M2_74
1379.0
M2_75
1377.8
M2_76
1373.9
M2_77
1367.0
M2_78
1363.6
M2_79
1361.0
M2_80
1355.4
M2_81
1350.0
M2_82
1333.3
M2_83
1331.6
M2_84
1326.4
M2_85
1315.0
M2_86
1303.5
M2_87
1285.3
M2_88
1271.3
M2_89
1242.1
M2_90
1103.7
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