A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2317.3
nTPM
Monaco:
521.5
nTPM
Schmiedel:
1103.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2317.3
HPA sample
nTPM
Memory B-cell nTPM: 2317.3
Samples: 6
Max nTPM: 3150.5
Min nTPM: 1990.9
P10809_1017
2009.4
P10809_1025
2299.9
P10809_1044
3150.5
P10809_1063
1990.9
P10809_1092
2024.3
P10809_1105
2428.7
Naive B-cell nTPM: 1951.1
Samples: 6
Max nTPM: 2831.0
Min nTPM: 1651.8
P10809_1011
1651.8
P10809_1029
1787.3
P10809_1048
2831.0
P10809_1067
1772.8
P10809_1091
1655.1
P10809_1104
2008.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
521.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 521.5
Samples: 4
Max nTPM: 903.2
Min nTPM: 142.7
RHH5310_R3677
578.7
RHH5218_R3590
142.7
RHH5247_R3619
903.2
RHH5276_R3648
461.5
Naive B-cell nTPM: 445.8
Samples: 4
Max nTPM: 675.5
Min nTPM: 256.1
RHH5308_R3675
675.5
RHH5216_R3588
256.1
RHH5245_R3617
557.9
RHH5274_R3646
293.7
Non-switched memory B-cell nTPM: 407.9
Samples: 4
Max nTPM: 658.6
Min nTPM: 202.5
RHH5309_R3676
658.6
RHH5217_R3589
202.5
RHH5246_R3618
328.7
RHH5275_R3647
441.9
Plasmablast nTPM: 430.2
Samples: 4
Max nTPM: 571.9
Min nTPM: 322.4
RHH5312_R3679
571.9
RHH5220_R3592
322.4
RHH5249_R3621
427.7
RHH5278_R3650
398.7
Switched memory B-cell nTPM: 422.1
Samples: 4
Max nTPM: 814.3
Min nTPM: 193.6
RHH5311_R3678
814.3
RHH5219_R3591
312.7
RHH5248_R3620
193.6
RHH5277_R3649
367.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1103.6
Schmiedel sample id
TPM
Naive B-cell TPM: 1103.6
Samples: 91
Max TPM: 1512.7
Min TPM: 446.5
B_CELL_NAIVE_1
1512.7
B_CELL_NAIVE_2
1480.0
B_CELL_NAIVE_3
1471.6
B_CELL_NAIVE_4
1459.3
B_CELL_NAIVE_5
1430.6
B_CELL_NAIVE_6
1430.0
B_CELL_NAIVE_7
1414.3
B_CELL_NAIVE_8
1398.1
B_CELL_NAIVE_9
1389.4
B_CELL_NAIVE_10
1387.0
B_CELL_NAIVE_11
1386.7
B_CELL_NAIVE_12
1383.5
B_CELL_NAIVE_13
1371.7
B_CELL_NAIVE_14
1364.3
B_CELL_NAIVE_15
1357.6
B_CELL_NAIVE_16
1353.8
B_CELL_NAIVE_17
1349.5
B_CELL_NAIVE_18
1347.8
B_CELL_NAIVE_19
1345.4
B_CELL_NAIVE_20
1345.3
B_CELL_NAIVE_21
1343.8
B_CELL_NAIVE_22
1327.4
B_CELL_NAIVE_23
1313.3
B_CELL_NAIVE_24
1306.2
B_CELL_NAIVE_25
1302.2
B_CELL_NAIVE_26
1287.5
B_CELL_NAIVE_27
1284.5
B_CELL_NAIVE_28
1283.9
B_CELL_NAIVE_29
1283.1
B_CELL_NAIVE_30
1277.2
B_CELL_NAIVE_31
1277.0
B_CELL_NAIVE_32
1242.5
B_CELL_NAIVE_33
1225.9
B_CELL_NAIVE_34
1212.2
B_CELL_NAIVE_35
1208.2
B_CELL_NAIVE_36
1204.6
B_CELL_NAIVE_37
1192.7
B_CELL_NAIVE_38
1187.5
B_CELL_NAIVE_39
1185.6
B_CELL_NAIVE_40
1180.0
B_CELL_NAIVE_41
1174.1
B_CELL_NAIVE_42
1166.3
B_CELL_NAIVE_43
1165.1
B_CELL_NAIVE_44
1163.6
B_CELL_NAIVE_45
1155.4
B_CELL_NAIVE_46
1147.3
B_CELL_NAIVE_47
1143.5
B_CELL_NAIVE_48
1141.5
B_CELL_NAIVE_49
1139.6
B_CELL_NAIVE_50
1135.4
B_CELL_NAIVE_51
1123.0
B_CELL_NAIVE_52
1112.2
B_CELL_NAIVE_53
1110.7
B_CELL_NAIVE_54
1097.1
B_CELL_NAIVE_55
1092.2
B_CELL_NAIVE_56
1077.3
B_CELL_NAIVE_57
1072.1
B_CELL_NAIVE_58
1052.4
B_CELL_NAIVE_59
1051.4
B_CELL_NAIVE_60
1049.6
B_CELL_NAIVE_61
1037.3
B_CELL_NAIVE_62
1023.1
B_CELL_NAIVE_63
1011.4
B_CELL_NAIVE_64
989.2
B_CELL_NAIVE_65
977.6
B_CELL_NAIVE_66
974.0
B_CELL_NAIVE_67
970.2
B_CELL_NAIVE_68
968.4
B_CELL_NAIVE_69
964.2
B_CELL_NAIVE_70
957.7
B_CELL_NAIVE_71
955.7
B_CELL_NAIVE_72
948.1
B_CELL_NAIVE_73
888.8
B_CELL_NAIVE_74
886.4
B_CELL_NAIVE_75
862.4
B_CELL_NAIVE_76
859.8
B_CELL_NAIVE_77
855.1
B_CELL_NAIVE_78
832.9
B_CELL_NAIVE_79
832.8
B_CELL_NAIVE_80
773.4
B_CELL_NAIVE_81
707.2
B_CELL_NAIVE_82
680.7
B_CELL_NAIVE_83
668.8
B_CELL_NAIVE_84
645.2
B_CELL_NAIVE_85
642.9
B_CELL_NAIVE_86
602.7
B_CELL_NAIVE_87
512.6
B_CELL_NAIVE_88
512.4
B_CELL_NAIVE_89
491.3
B_CELL_NAIVE_90
474.2
B_CELL_NAIVE_91
446.5
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