A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
849.4
nTPM
Monaco:
250.4
nTPM
Schmiedel:
641.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
849.4
HPA sample
nTPM
Classical monocyte nTPM: 849.4
Samples: 6
Max nTPM: 1464.9
Min nTPM: 587.8
P10809_1003
1464.9
P10809_1020
662.0
P10809_1039
795.6
P10809_1058
697.6
P10809_1080
587.8
P10809_1107
888.8
Intermediate monocyte nTPM: 814.9
Samples: 6
Max nTPM: 1238.2
Min nTPM: 603.9
P10809_1004
671.4
P10809_1023
880.6
P10809_1042
856.8
P10809_1061
638.5
P10809_1081
603.9
P10809_1108
1238.2
Non-classical monocyte nTPM: 655.9
Samples: 5
Max nTPM: 892.0
Min nTPM: 540.9
P10809_1005
735.2
P10809_1053
555.6
P10809_1072
540.9
P10809_1082
555.7
P10809_1109
892.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
250.4
Monaco sample
nTPM
Classical monocyte nTPM: 193.6
Samples: 4
Max nTPM: 245.5
Min nTPM: 165.3
RHH5313_R3680
245.5
RHH5221_R3593
165.3
RHH5250_R3622
167.7
RHH5279_R3651
195.9
Intermediate monocyte nTPM: 250.4
Samples: 4
Max nTPM: 328.4
Min nTPM: 191.2
RHH5314_R3681
328.4
RHH5222_R3594
233.7
RHH5251_R3623
248.3
RHH5280_R3652
191.2
Non-classical monocyte nTPM: 155.9
Samples: 4
Max nTPM: 235.8
Min nTPM: 109.1
RHH5315_R3682
235.8
RHH5223_R3595
132.3
RHH5252_R3624
146.5
RHH5281_R3653
109.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
641.7
Schmiedel sample id
TPM
Classical monocyte TPM: 641.7
Samples: 91
Max TPM: 870.1
Min TPM: 453.6
MONOCYTES_1
870.1
MONOCYTES_2
850.5
MONOCYTES_3
782.8
MONOCYTES_4
768.7
MONOCYTES_5
768.6
MONOCYTES_6
754.2
MONOCYTES_7
749.4
MONOCYTES_8
748.1
MONOCYTES_9
747.1
MONOCYTES_10
746.6
MONOCYTES_11
739.9
MONOCYTES_12
738.6
MONOCYTES_13
738.1
MONOCYTES_14
733.5
MONOCYTES_15
733.4
MONOCYTES_16
727.6
MONOCYTES_17
724.7
MONOCYTES_18
722.2
MONOCYTES_19
717.6
MONOCYTES_20
715.9
MONOCYTES_21
706.0
MONOCYTES_22
705.2
MONOCYTES_23
705.1
MONOCYTES_24
704.2
MONOCYTES_25
701.2
MONOCYTES_26
699.3
MONOCYTES_27
697.4
MONOCYTES_28
695.4
MONOCYTES_29
693.5
MONOCYTES_30
693.0
MONOCYTES_31
692.7
MONOCYTES_32
688.3
MONOCYTES_33
684.0
MONOCYTES_34
680.0
MONOCYTES_35
676.4
MONOCYTES_36
676.1
MONOCYTES_37
676.1
MONOCYTES_38
674.9
MONOCYTES_39
674.4
MONOCYTES_40
672.2
MONOCYTES_41
668.2
MONOCYTES_42
661.2
MONOCYTES_43
660.7
MONOCYTES_44
654.2
MONOCYTES_45
652.8
MONOCYTES_46
652.4
MONOCYTES_47
651.7
MONOCYTES_48
650.0
MONOCYTES_49
649.3
MONOCYTES_50
649.1
MONOCYTES_51
644.3
MONOCYTES_52
643.2
MONOCYTES_53
640.6
MONOCYTES_54
639.4
MONOCYTES_55
626.0
MONOCYTES_56
622.9
MONOCYTES_57
622.1
MONOCYTES_58
618.9
MONOCYTES_59
618.3
MONOCYTES_60
612.5
MONOCYTES_61
610.4
MONOCYTES_62
606.5
MONOCYTES_63
604.7
MONOCYTES_64
603.2
MONOCYTES_65
601.5
MONOCYTES_66
597.7
MONOCYTES_67
593.9
MONOCYTES_68
581.5
MONOCYTES_69
580.4
MONOCYTES_70
579.8
MONOCYTES_71
576.7
MONOCYTES_72
557.9
MONOCYTES_73
556.6
MONOCYTES_74
550.6
MONOCYTES_75
548.9
MONOCYTES_76
536.3
MONOCYTES_77
530.5
MONOCYTES_78
528.5
MONOCYTES_79
525.2
MONOCYTES_80
523.6
MONOCYTES_81
517.2
MONOCYTES_82
512.6
MONOCYTES_83
506.1
MONOCYTES_84
505.0
MONOCYTES_85
483.9
MONOCYTES_86
474.9
MONOCYTES_87
468.1
MONOCYTES_88
458.5
MONOCYTES_89
455.7
MONOCYTES_90
455.6
MONOCYTES_91
453.6
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Non-classical monocyte TPM: 512.8
Samples: 90
Max TPM: 815.9
Min TPM: 239.0
M2_1
815.9
M2_2
722.5
M2_3
698.6
M2_4
664.2
M2_5
650.6
M2_6
642.7
M2_7
638.0
M2_8
624.0
M2_9
623.7
M2_10
614.7
M2_11
613.6
M2_12
613.2
M2_13
611.5
M2_14
603.0
M2_15
602.5
M2_16
597.2
M2_17
590.9
M2_18
589.6
M2_19
588.9
M2_20
584.7
M2_21
583.3
M2_22
582.1
M2_23
581.3
M2_24
581.3
M2_25
579.5
M2_26
573.7
M2_27
573.6
M2_28
570.0
M2_29
566.6
M2_30
566.5
M2_31
559.8
M2_32
559.3
M2_33
559.0
M2_34
558.4
M2_35
555.2
M2_36
552.9
M2_37
550.5
M2_38
548.5
M2_39
545.4
M2_40
543.2
M2_41
541.1
M2_42
536.8
M2_43
535.3
M2_44
533.9
M2_45
533.7
M2_46
532.3
M2_47
527.0
M2_48
526.2
M2_49
524.3
M2_50
523.7
M2_51
523.3
M2_52
521.8
M2_53
518.8
M2_54
516.7
M2_55
513.5
M2_56
513.2
M2_57
509.2
M2_58
505.5
M2_59
489.4
M2_60
483.8
M2_61
479.6
M2_62
478.6
M2_63
470.0
M2_64
467.6
M2_65
457.1
M2_66
449.7
M2_67
448.3
M2_68
444.0
M2_69
441.3
M2_70
440.6
M2_71
437.0
M2_72
429.9
M2_73
423.6
M2_74
416.6
M2_75
412.6
M2_76
409.0
M2_77
408.5
M2_78
397.6
M2_79
391.5
M2_80
382.2
M2_81
348.3
M2_82
335.9
M2_83
334.9
M2_84
329.6
M2_85
328.1
M2_86
324.4
M2_87
285.7
M2_88
283.6
M2_89
271.1
M2_90
239.0
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