A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1023.5
nTPM
Monaco:
112.4
nTPM
Schmiedel:
511.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1023.5
HPA sample
nTPM
NK-cell nTPM: 1023.5
Samples: 6
Max nTPM: 1191.8
Min nTPM: 826.0
P10809_1013
998.0
P10809_1033
1191.8
P10809_1052
989.7
P10809_1071
1069.0
P10809_1093
826.0
P10809_1103
1066.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
112.4
Monaco sample
nTPM
NK-cell nTPM: 112.4
Samples: 4
Max nTPM: 149.9
Min nTPM: 79.2
RHH5316_R3683
149.9
RHH5224_R3596
115.9
RHH5253_R3625
79.2
RHH5282_R3654
104.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
511.0
Schmiedel sample id
TPM
NK-cell TPM: 511.0
Samples: 90
Max TPM: 844.5
Min TPM: 267.1
NK_1
844.5
NK_2
721.8
NK_3
704.0
NK_4
677.2
NK_5
664.0
NK_6
656.5
NK_7
656.4
NK_8
655.3
NK_9
652.5
NK_10
649.1
NK_11
639.4
NK_12
633.5
NK_13
626.1
NK_14
621.5
NK_15
607.7
NK_16
606.8
NK_17
604.8
NK_18
597.0
NK_19
596.0
NK_20
595.8
NK_21
595.1
NK_22
590.9
NK_23
586.8
NK_24
584.6
NK_25
575.9
NK_26
575.9
NK_27
574.0
NK_28
560.7
NK_29
551.5
NK_30
547.4
NK_31
547.1
NK_32
546.1
NK_33
541.0
NK_34
539.3
NK_35
532.7
NK_36
532.5
NK_37
528.5
NK_38
525.9
NK_39
525.9
NK_40
524.6
NK_41
523.0
NK_42
522.5
NK_43
520.3
NK_44
519.7
NK_45
516.0
NK_46
513.4
NK_47
513.0
NK_48
508.2
NK_49
507.6
NK_50
499.9
NK_51
499.0
NK_52
489.1
NK_53
488.6
NK_54
486.4
NK_55
485.3
NK_56
481.9
NK_57
480.4
NK_58
478.8
NK_59
474.1
NK_60
471.8
NK_61
470.0
NK_62
467.9
NK_63
467.9
NK_64
464.6
NK_65
461.9
NK_66
457.9
NK_67
452.1
NK_68
450.1
NK_69
444.2
NK_70
437.9
NK_71
426.1
NK_72
425.2
NK_73
422.8
NK_74
420.3
NK_75
418.3
NK_76
416.3
NK_77
399.6
NK_78
395.1
NK_79
389.1
NK_80
361.7
NK_81
350.9
NK_82
349.9
NK_83
346.1
NK_84
344.7
NK_85
341.0
NK_86
338.5
NK_87
335.3
NK_88
308.6
NK_89
286.5
NK_90
267.1
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