A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
20.0
nTPM
Monaco:
184.3
nTPM
Schmiedel:
99.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.0
HPA sample
nTPM
Memory B-cell nTPM: 20.0
Samples: 6
Max nTPM: 32.8
Min nTPM: 12.5
P10809_1017
32.8
P10809_1025
17.8
P10809_1044
20.9
P10809_1063
17.3
P10809_1092
12.5
P10809_1105
18.8
Naive B-cell nTPM: 16.4
Samples: 6
Max nTPM: 24.5
Min nTPM: 9.4
P10809_1011
24.5
P10809_1029
19.0
P10809_1048
9.4
P10809_1067
12.7
P10809_1091
18.5
P10809_1104
14.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
184.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 184.3
Samples: 4
Max nTPM: 215.1
Min nTPM: 149.3
RHH5310_R3677
212.0
RHH5218_R3590
215.1
RHH5247_R3619
149.3
RHH5276_R3648
160.9
Naive B-cell nTPM: 159.6
Samples: 4
Max nTPM: 193.2
Min nTPM: 135.1
RHH5308_R3675
167.7
RHH5216_R3588
193.2
RHH5245_R3617
135.1
RHH5274_R3646
142.2
Non-switched memory B-cell nTPM: 181.0
Samples: 4
Max nTPM: 194.5
Min nTPM: 167.4
RHH5309_R3676
176.2
RHH5217_R3589
167.4
RHH5246_R3618
194.5
RHH5275_R3647
185.8
Plasmablast nTPM: 109.2
Samples: 4
Max nTPM: 117.2
Min nTPM: 105.7
RHH5312_R3679
105.8
RHH5220_R3592
117.2
RHH5249_R3621
108.0
RHH5278_R3650
105.7
Switched memory B-cell nTPM: 152.1
Samples: 4
Max nTPM: 168.4
Min nTPM: 123.6
RHH5311_R3678
123.6
RHH5219_R3591
154.0
RHH5248_R3620
168.4
RHH5277_R3649
162.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
99.6
Schmiedel sample id
TPM
Naive B-cell TPM: 99.6
Samples: 91
Max TPM: 136.5
Min TPM: 39.4
B_CELL_NAIVE_1
136.5
B_CELL_NAIVE_2
134.6
B_CELL_NAIVE_3
129.7
B_CELL_NAIVE_4
125.3
B_CELL_NAIVE_5
123.0
B_CELL_NAIVE_6
121.1
B_CELL_NAIVE_7
120.8
B_CELL_NAIVE_8
120.7
B_CELL_NAIVE_9
119.4
B_CELL_NAIVE_10
119.0
B_CELL_NAIVE_11
118.4
B_CELL_NAIVE_12
118.2
B_CELL_NAIVE_13
117.3
B_CELL_NAIVE_14
116.9
B_CELL_NAIVE_15
116.4
B_CELL_NAIVE_16
115.8
B_CELL_NAIVE_17
114.5
B_CELL_NAIVE_18
113.0
B_CELL_NAIVE_19
112.6
B_CELL_NAIVE_20
112.4
B_CELL_NAIVE_21
112.3
B_CELL_NAIVE_22
111.6
B_CELL_NAIVE_23
111.2
B_CELL_NAIVE_24
110.9
B_CELL_NAIVE_25
110.7
B_CELL_NAIVE_26
110.7
B_CELL_NAIVE_27
110.5
B_CELL_NAIVE_28
110.3
B_CELL_NAIVE_29
110.1
B_CELL_NAIVE_30
109.5
B_CELL_NAIVE_31
109.0
B_CELL_NAIVE_32
108.8
B_CELL_NAIVE_33
108.6
B_CELL_NAIVE_34
108.5
B_CELL_NAIVE_35
108.5
B_CELL_NAIVE_36
107.9
B_CELL_NAIVE_37
107.3
B_CELL_NAIVE_38
106.5
B_CELL_NAIVE_39
106.4
B_CELL_NAIVE_40
106.3
B_CELL_NAIVE_41
105.3
B_CELL_NAIVE_42
105.2
B_CELL_NAIVE_43
105.1
B_CELL_NAIVE_44
104.8
B_CELL_NAIVE_45
104.4
B_CELL_NAIVE_46
103.0
B_CELL_NAIVE_47
102.4
B_CELL_NAIVE_48
102.1
B_CELL_NAIVE_49
101.5
B_CELL_NAIVE_50
101.4
B_CELL_NAIVE_51
101.4
B_CELL_NAIVE_52
101.3
B_CELL_NAIVE_53
100.7
B_CELL_NAIVE_54
100.7
B_CELL_NAIVE_55
100.0
B_CELL_NAIVE_56
99.3
B_CELL_NAIVE_57
98.4
B_CELL_NAIVE_58
98.4
B_CELL_NAIVE_59
98.1
B_CELL_NAIVE_60
97.7
B_CELL_NAIVE_61
96.9
B_CELL_NAIVE_62
96.9
B_CELL_NAIVE_63
96.3
B_CELL_NAIVE_64
96.2
B_CELL_NAIVE_65
94.1
B_CELL_NAIVE_66
93.9
B_CELL_NAIVE_67
93.3
B_CELL_NAIVE_68
92.7
B_CELL_NAIVE_69
91.7
B_CELL_NAIVE_70
91.3
B_CELL_NAIVE_71
90.9
B_CELL_NAIVE_72
90.5
B_CELL_NAIVE_73
90.0
B_CELL_NAIVE_74
88.8
B_CELL_NAIVE_75
85.0
B_CELL_NAIVE_76
82.8
B_CELL_NAIVE_77
81.0
B_CELL_NAIVE_78
80.9
B_CELL_NAIVE_79
79.8
B_CELL_NAIVE_80
79.1
B_CELL_NAIVE_81
79.0
B_CELL_NAIVE_82
76.2
B_CELL_NAIVE_83
67.3
B_CELL_NAIVE_84
64.8
B_CELL_NAIVE_85
64.2
B_CELL_NAIVE_86
62.6
B_CELL_NAIVE_87
54.4
B_CELL_NAIVE_88
51.5
B_CELL_NAIVE_89
46.9
B_CELL_NAIVE_90
42.9
B_CELL_NAIVE_91
39.4
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
