A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
26.0
nTPM
Monaco:
182.0
nTPM
Schmiedel:
78.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.0
HPA sample
nTPM
Classical monocyte nTPM: 22.1
Samples: 6
Max nTPM: 39.7
Min nTPM: 15.3
P10809_1003
39.7
P10809_1020
23.2
P10809_1039
15.3
P10809_1058
17.0
P10809_1080
18.1
P10809_1107
19.2
Intermediate monocyte nTPM: 24.2
Samples: 6
Max nTPM: 39.7
Min nTPM: 16.6
P10809_1004
39.7
P10809_1023
18.5
P10809_1042
18.2
P10809_1061
29.6
P10809_1081
16.6
P10809_1108
22.4
Non-classical monocyte nTPM: 26.0
Samples: 5
Max nTPM: 48.5
Min nTPM: 11.3
P10809_1005
30.5
P10809_1053
22.8
P10809_1072
48.5
P10809_1082
11.3
P10809_1109
17.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
182.0
Monaco sample
nTPM
Classical monocyte nTPM: 170.8
Samples: 4
Max nTPM: 195.2
Min nTPM: 148.9
RHH5313_R3680
172.4
RHH5221_R3593
195.2
RHH5250_R3622
148.9
RHH5279_R3651
166.7
Intermediate monocyte nTPM: 160.6
Samples: 4
Max nTPM: 224.3
Min nTPM: 116.8
RHH5314_R3681
163.0
RHH5222_R3594
224.3
RHH5251_R3623
116.8
RHH5280_R3652
138.2
Non-classical monocyte nTPM: 182.0
Samples: 4
Max nTPM: 222.5
Min nTPM: 163.0
RHH5315_R3682
174.6
RHH5223_R3595
222.5
RHH5252_R3624
167.8
RHH5281_R3653
163.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
78.3
Schmiedel sample id
TPM
Classical monocyte TPM: 74.2
Samples: 91
Max TPM: 90.1
Min TPM: 56.0
MONOCYTES_1
90.1
MONOCYTES_2
89.1
MONOCYTES_3
87.7
MONOCYTES_4
86.3
MONOCYTES_5
84.6
MONOCYTES_6
84.1
MONOCYTES_7
83.5
MONOCYTES_8
83.3
MONOCYTES_9
83.1
MONOCYTES_10
83.0
MONOCYTES_11
83.0
MONOCYTES_12
82.4
MONOCYTES_13
82.3
MONOCYTES_14
81.7
MONOCYTES_15
81.4
MONOCYTES_16
81.2
MONOCYTES_17
81.0
MONOCYTES_18
80.8
MONOCYTES_19
80.8
MONOCYTES_20
80.1
MONOCYTES_21
79.4
MONOCYTES_22
78.1
MONOCYTES_23
78.1
MONOCYTES_24
78.0
MONOCYTES_25
77.9
MONOCYTES_26
77.7
MONOCYTES_27
77.2
MONOCYTES_28
77.1
MONOCYTES_29
76.8
MONOCYTES_30
76.7
MONOCYTES_31
76.6
MONOCYTES_32
76.6
MONOCYTES_33
76.5
MONOCYTES_34
76.5
MONOCYTES_35
76.4
MONOCYTES_36
76.4
MONOCYTES_37
76.3
MONOCYTES_38
76.1
MONOCYTES_39
76.1
MONOCYTES_40
75.7
MONOCYTES_41
75.7
MONOCYTES_42
75.5
MONOCYTES_43
75.4
MONOCYTES_44
75.4
MONOCYTES_45
75.1
MONOCYTES_46
75.1
MONOCYTES_47
75.0
MONOCYTES_48
74.6
MONOCYTES_49
74.5
MONOCYTES_50
74.4
MONOCYTES_51
74.3
MONOCYTES_52
74.2
MONOCYTES_53
73.8
MONOCYTES_54
73.8
MONOCYTES_55
73.7
MONOCYTES_56
73.2
MONOCYTES_57
72.9
MONOCYTES_58
72.6
MONOCYTES_59
72.4
MONOCYTES_60
72.1
MONOCYTES_61
71.5
MONOCYTES_62
71.4
MONOCYTES_63
71.4
MONOCYTES_64
71.4
MONOCYTES_65
71.3
MONOCYTES_66
71.0
MONOCYTES_67
70.6
MONOCYTES_68
70.6
MONOCYTES_69
70.6
MONOCYTES_70
70.5
MONOCYTES_71
70.1
MONOCYTES_72
69.8
MONOCYTES_73
69.6
MONOCYTES_74
69.5
MONOCYTES_75
69.1
MONOCYTES_76
68.8
MONOCYTES_77
68.2
MONOCYTES_78
67.4
MONOCYTES_79
66.7
MONOCYTES_80
65.8
MONOCYTES_81
65.2
MONOCYTES_82
64.4
MONOCYTES_83
64.4
MONOCYTES_84
63.9
MONOCYTES_85
63.4
MONOCYTES_86
58.9
MONOCYTES_87
58.4
MONOCYTES_88
57.4
MONOCYTES_89
57.3
MONOCYTES_90
56.1
MONOCYTES_91
56.0
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Non-classical monocyte TPM: 78.3
Samples: 90
Max TPM: 102.7
Min TPM: 43.5
M2_1
102.7
M2_2
99.1
M2_3
98.8
M2_4
98.1
M2_5
94.5
M2_6
93.8
M2_7
91.9
M2_8
91.0
M2_9
90.8
M2_10
90.5
M2_11
89.1
M2_12
88.8
M2_13
88.1
M2_14
88.0
M2_15
87.9
M2_16
87.9
M2_17
87.6
M2_18
86.9
M2_19
86.8
M2_20
86.8
M2_21
86.2
M2_22
86.1
M2_23
85.8
M2_24
85.0
M2_25
84.7
M2_26
84.5
M2_27
83.4
M2_28
83.4
M2_29
83.1
M2_30
83.0
M2_31
83.0
M2_32
83.0
M2_33
82.8
M2_34
82.8
M2_35
82.7
M2_36
82.4
M2_37
82.0
M2_38
81.9
M2_39
81.6
M2_40
81.3
M2_41
81.1
M2_42
81.1
M2_43
80.4
M2_44
80.2
M2_45
79.6
M2_46
79.2
M2_47
79.1
M2_48
78.8
M2_49
78.8
M2_50
78.8
M2_51
78.7
M2_52
78.6
M2_53
78.5
M2_54
78.4
M2_55
78.4
M2_56
78.2
M2_57
77.9
M2_58
77.8
M2_59
77.7
M2_60
77.3
M2_61
76.6
M2_62
76.4
M2_63
73.7
M2_64
72.7
M2_65
72.2
M2_66
72.1
M2_67
72.0
M2_68
71.7
M2_69
71.7
M2_70
70.8
M2_71
70.6
M2_72
70.4
M2_73
69.9
M2_74
69.7
M2_75
69.2
M2_76
68.8
M2_77
67.3
M2_78
66.8
M2_79
66.0
M2_80
65.8
M2_81
64.8
M2_82
61.3
M2_83
59.3
M2_84
58.9
M2_85
58.3
M2_86
56.7
M2_87
56.2
M2_88
54.9
M2_89
45.4
M2_90
43.5
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