A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
19.1
nTPM
Monaco:
150.4
nTPM
Schmiedel:
93.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.1
HPA sample
nTPM
NK-cell nTPM: 19.2
Samples: 6
Max nTPM: 37.5
Min nTPM: 5.3
P10809_1013
19.1
P10809_1033
17.3
P10809_1052
37.5
P10809_1071
14.4
P10809_1093
5.3
P10809_1103
21.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
150.4
Monaco sample
nTPM
NK-cell nTPM: 150.5
Samples: 4
Max nTPM: 162.5
Min nTPM: 141.4
RHH5316_R3683
150.6
RHH5224_R3596
147.3
RHH5253_R3625
162.5
RHH5282_R3654
141.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
93.3
Schmiedel sample id
TPM
NK-cell TPM: 93.3
Samples: 90
Max TPM: 121.6
Min TPM: 51.0
NK_1
121.6
NK_2
121.3
NK_3
120.4
NK_4
117.9
NK_5
117.5
NK_6
114.4
NK_7
113.4
NK_8
112.9
NK_9
112.7
NK_10
112.2
NK_11
112.1
NK_12
111.1
NK_13
110.6
NK_14
109.9
NK_15
109.8
NK_16
109.6
NK_17
107.9
NK_18
105.7
NK_19
105.6
NK_20
105.4
NK_21
105.3
NK_22
103.8
NK_23
102.6
NK_24
102.6
NK_25
102.3
NK_26
101.9
NK_27
101.7
NK_28
101.6
NK_29
101.6
NK_30
101.3
NK_31
100.8
NK_32
100.4
NK_33
100.4
NK_34
100.4
NK_35
100.3
NK_36
99.6
NK_37
99.2
NK_38
99.2
NK_39
98.8
NK_40
96.2
NK_41
95.3
NK_42
95.0
NK_43
93.9
NK_44
93.9
NK_45
93.0
NK_46
93.0
NK_47
92.6
NK_48
92.2
NK_49
92.0
NK_50
92.0
NK_51
91.4
NK_52
91.2
NK_53
91.1
NK_54
91.1
NK_55
90.7
NK_56
90.6
NK_57
89.7
NK_58
89.6
NK_59
89.6
NK_60
89.3
NK_61
89.2
NK_62
88.9
NK_63
88.5
NK_64
88.3
NK_65
86.8
NK_66
86.7
NK_67
86.0
NK_68
85.9
NK_69
85.1
NK_70
83.9
NK_71
83.2
NK_72
80.4
NK_73
80.0
NK_74
79.4
NK_75
78.9
NK_76
78.7
NK_77
78.7
NK_78
77.5
NK_79
74.7
NK_80
74.1
NK_81
72.4
NK_82
72.0
NK_83
70.2
NK_84
69.7
NK_85
67.4
NK_86
64.1
NK_87
58.5
NK_88
58.2
NK_89
51.6
NK_90
51.0
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