A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.3
nTPM
Monaco:
39.3
nTPM
Schmiedel:
48.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.3
HPA sample
nTPM
Memory B-cell nTPM: 15.9
Samples: 6
Max nTPM: 23.1
Min nTPM: 11.4
P10809_1017
11.4
P10809_1025
18.3
P10809_1044
23.1
P10809_1063
12.8
P10809_1092
12.7
P10809_1105
17.0
Naive B-cell nTPM: 16.3
Samples: 6
Max nTPM: 21.5
Min nTPM: 10.9
P10809_1011
10.9
P10809_1029
20.5
P10809_1048
11.5
P10809_1067
18.6
P10809_1091
21.5
P10809_1104
15.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 26.2
Samples: 4
Max nTPM: 38.5
Min nTPM: 17.4
RHH5310_R3677
20.2
RHH5218_R3590
38.5
RHH5247_R3619
28.5
RHH5276_R3648
17.4
Naive B-cell nTPM: 29.4
Samples: 4
Max nTPM: 36.5
Min nTPM: 21.7
RHH5308_R3675
27.6
RHH5216_R3588
36.5
RHH5245_R3617
21.7
RHH5274_R3646
31.6
Non-switched memory B-cell nTPM: 30.9
Samples: 4
Max nTPM: 44.4
Min nTPM: 20.8
RHH5309_R3676
27.1
RHH5217_R3589
44.4
RHH5246_R3618
31.2
RHH5275_R3647
20.8
Plasmablast nTPM: 22.3
Samples: 4
Max nTPM: 36.4
Min nTPM: 13.9
RHH5312_R3679
13.9
RHH5220_R3592
36.4
RHH5249_R3621
19.0
RHH5278_R3650
19.8
Switched memory B-cell nTPM: 39.3
Samples: 4
Max nTPM: 55.9
Min nTPM: 11.8
RHH5311_R3678
41.8
RHH5219_R3591
55.9
RHH5248_R3620
47.7
RHH5277_R3649
11.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.7
Schmiedel sample id
TPM
Naive B-cell TPM: 48.7
Samples: 91
Max TPM: 74.7
Min TPM: 33.0
B_CELL_NAIVE_1
74.7
B_CELL_NAIVE_2
73.6
B_CELL_NAIVE_3
72.4
B_CELL_NAIVE_4
72.0
B_CELL_NAIVE_5
71.5
B_CELL_NAIVE_6
67.9
B_CELL_NAIVE_7
63.8
B_CELL_NAIVE_8
62.8
B_CELL_NAIVE_9
62.5
B_CELL_NAIVE_10
62.1
B_CELL_NAIVE_11
60.1
B_CELL_NAIVE_12
59.7
B_CELL_NAIVE_13
59.2
B_CELL_NAIVE_14
59.1
B_CELL_NAIVE_15
58.9
B_CELL_NAIVE_16
58.3
B_CELL_NAIVE_17
57.4
B_CELL_NAIVE_18
56.7
B_CELL_NAIVE_19
56.5
B_CELL_NAIVE_20
56.3
B_CELL_NAIVE_21
56.3
B_CELL_NAIVE_22
55.0
B_CELL_NAIVE_23
54.3
B_CELL_NAIVE_24
53.9
B_CELL_NAIVE_25
53.6
B_CELL_NAIVE_26
53.1
B_CELL_NAIVE_27
52.3
B_CELL_NAIVE_28
52.1
B_CELL_NAIVE_29
51.0
B_CELL_NAIVE_30
50.8
B_CELL_NAIVE_31
49.8
B_CELL_NAIVE_32
49.7
B_CELL_NAIVE_33
49.5
B_CELL_NAIVE_34
49.3
B_CELL_NAIVE_35
48.8
B_CELL_NAIVE_36
48.7
B_CELL_NAIVE_37
48.5
B_CELL_NAIVE_38
48.4
B_CELL_NAIVE_39
48.3
B_CELL_NAIVE_40
48.1
B_CELL_NAIVE_41
47.6
B_CELL_NAIVE_42
47.3
B_CELL_NAIVE_43
47.3
B_CELL_NAIVE_44
47.1
B_CELL_NAIVE_45
47.1
B_CELL_NAIVE_46
46.8
B_CELL_NAIVE_47
46.4
B_CELL_NAIVE_48
46.2
B_CELL_NAIVE_49
46.2
B_CELL_NAIVE_50
45.8
B_CELL_NAIVE_51
45.7
B_CELL_NAIVE_52
45.4
B_CELL_NAIVE_53
45.3
B_CELL_NAIVE_54
44.8
B_CELL_NAIVE_55
44.7
B_CELL_NAIVE_56
44.5
B_CELL_NAIVE_57
44.4
B_CELL_NAIVE_58
44.2
B_CELL_NAIVE_59
44.2
B_CELL_NAIVE_60
44.0
B_CELL_NAIVE_61
44.0
B_CELL_NAIVE_62
43.9
B_CELL_NAIVE_63
43.4
B_CELL_NAIVE_64
43.0
B_CELL_NAIVE_65
42.9
B_CELL_NAIVE_66
42.8
B_CELL_NAIVE_67
42.3
B_CELL_NAIVE_68
42.0
B_CELL_NAIVE_69
41.9
B_CELL_NAIVE_70
41.5
B_CELL_NAIVE_71
41.3
B_CELL_NAIVE_72
41.0
B_CELL_NAIVE_73
40.9
B_CELL_NAIVE_74
40.9
B_CELL_NAIVE_75
40.7
B_CELL_NAIVE_76
40.6
B_CELL_NAIVE_77
40.0
B_CELL_NAIVE_78
40.0
B_CELL_NAIVE_79
39.1
B_CELL_NAIVE_80
39.1
B_CELL_NAIVE_81
39.0
B_CELL_NAIVE_82
38.7
B_CELL_NAIVE_83
38.3
B_CELL_NAIVE_84
37.7
B_CELL_NAIVE_85
37.3
B_CELL_NAIVE_86
37.0
B_CELL_NAIVE_87
36.2
B_CELL_NAIVE_88
35.9
B_CELL_NAIVE_89
35.3
B_CELL_NAIVE_90
33.7
B_CELL_NAIVE_91
33.0
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The Human Protein Atlas project is funded
