A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
27.9
nTPM
Monaco:
43.1
nTPM
Schmiedel:
83.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.9
HPA sample
nTPM
NK-cell nTPM: 27.9
Samples: 6
Max nTPM: 44.6
Min nTPM: 15.3
P10809_1013
15.3
P10809_1033
37.0
P10809_1052
25.9
P10809_1071
16.1
P10809_1093
44.6
P10809_1103
28.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.1
Monaco sample
nTPM
NK-cell nTPM: 43.1
Samples: 4
Max nTPM: 54.9
Min nTPM: 37.4
RHH5316_R3683
37.4
RHH5224_R3596
54.9
RHH5253_R3625
41.0
RHH5282_R3654
39.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
83.6
Schmiedel sample id
TPM
NK-cell TPM: 83.6
Samples: 90
Max TPM: 158.8
Min TPM: 51.2
NK_1
158.8
NK_2
139.8
NK_3
137.7
NK_4
128.2
NK_5
124.3
NK_6
115.1
NK_7
110.6
NK_8
109.8
NK_9
108.4
NK_10
108.2
NK_11
104.9
NK_12
103.8
NK_13
103.7
NK_14
102.5
NK_15
102.3
NK_16
99.0
NK_17
98.5
NK_18
96.8
NK_19
96.6
NK_20
95.4
NK_21
95.1
NK_22
94.2
NK_23
94.2
NK_24
93.3
NK_25
92.8
NK_26
92.8
NK_27
92.3
NK_28
92.0
NK_29
92.0
NK_30
91.5
NK_31
91.3
NK_32
91.0
NK_33
90.4
NK_34
89.6
NK_35
87.5
NK_36
86.6
NK_37
85.9
NK_38
84.0
NK_39
83.4
NK_40
83.3
NK_41
82.0
NK_42
80.3
NK_43
80.2
NK_44
79.6
NK_45
79.3
NK_46
77.1
NK_47
76.9
NK_48
76.9
NK_49
76.8
NK_50
76.5
NK_51
76.4
NK_52
76.1
NK_53
75.4
NK_54
75.1
NK_55
74.7
NK_56
74.4
NK_57
74.1
NK_58
73.7
NK_59
73.4
NK_60
72.9
NK_61
72.8
NK_62
72.7
NK_63
72.3
NK_64
72.1
NK_65
71.6
NK_66
71.1
NK_67
70.8
NK_68
69.7
NK_69
69.5
NK_70
69.4
NK_71
68.4
NK_72
68.0
NK_73
68.0
NK_74
66.8
NK_75
66.8
NK_76
66.6
NK_77
66.6
NK_78
65.2
NK_79
64.9
NK_80
63.8
NK_81
63.1
NK_82
61.8
NK_83
60.2
NK_84
58.1
NK_85
57.9
NK_86
56.9
NK_87
54.4
NK_88
54.3
NK_89
52.9
NK_90
51.2
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