A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
40.1
nTPM
Monaco:
90.2
nTPM
Schmiedel:
175.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.1
HPA sample
nTPM
Classical monocyte nTPM: 40.1
Samples: 6
Max nTPM: 58.8
Min nTPM: 31.0
P10809_1003
31.0
P10809_1020
44.3
P10809_1039
58.8
P10809_1058
31.5
P10809_1080
39.0
P10809_1107
36.2
Intermediate monocyte nTPM: 24.8
Samples: 6
Max nTPM: 28.6
Min nTPM: 21.3
P10809_1004
21.6
P10809_1023
28.4
P10809_1042
27.1
P10809_1061
21.3
P10809_1081
21.7
P10809_1108
28.6
Non-classical monocyte nTPM: 28.6
Samples: 5
Max nTPM: 66.0
Min nTPM: 16.1
P10809_1005
16.1
P10809_1053
20.6
P10809_1072
66.0
P10809_1082
20.1
P10809_1109
20.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
90.2
Monaco sample
nTPM
Classical monocyte nTPM: 90.2
Samples: 4
Max nTPM: 111.8
Min nTPM: 77.9
RHH5313_R3680
86.8
RHH5221_R3593
77.9
RHH5250_R3622
111.8
RHH5279_R3651
84.3
Intermediate monocyte nTPM: 45.8
Samples: 4
Max nTPM: 55.8
Min nTPM: 30.0
RHH5314_R3681
55.8
RHH5222_R3594
30.0
RHH5251_R3623
43.0
RHH5280_R3652
54.2
Non-classical monocyte nTPM: 46.4
Samples: 4
Max nTPM: 64.1
Min nTPM: 32.9
RHH5315_R3682
49.8
RHH5223_R3595
32.9
RHH5252_R3624
64.1
RHH5281_R3653
39.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
175.1
Schmiedel sample id
TPM
Classical monocyte TPM: 175.1
Samples: 91
Max TPM: 382.5
Min TPM: 99.8
MONOCYTES_1
382.5
MONOCYTES_2
311.3
MONOCYTES_3
277.2
MONOCYTES_4
260.6
MONOCYTES_5
251.5
MONOCYTES_6
234.3
MONOCYTES_7
226.7
MONOCYTES_8
225.7
MONOCYTES_9
223.4
MONOCYTES_10
220.4
MONOCYTES_11
219.4
MONOCYTES_12
218.0
MONOCYTES_13
210.4
MONOCYTES_14
210.3
MONOCYTES_15
209.6
MONOCYTES_16
207.1
MONOCYTES_17
206.4
MONOCYTES_18
202.5
MONOCYTES_19
201.8
MONOCYTES_20
199.7
MONOCYTES_21
197.9
MONOCYTES_22
195.6
MONOCYTES_23
195.2
MONOCYTES_24
193.4
MONOCYTES_25
190.6
MONOCYTES_26
189.0
MONOCYTES_27
189.0
MONOCYTES_28
188.6
MONOCYTES_29
187.7
MONOCYTES_30
185.5
MONOCYTES_31
184.4
MONOCYTES_32
183.9
MONOCYTES_33
183.5
MONOCYTES_34
183.1
MONOCYTES_35
183.0
MONOCYTES_36
177.2
MONOCYTES_37
177.1
MONOCYTES_38
175.5
MONOCYTES_39
175.3
MONOCYTES_40
174.9
MONOCYTES_41
174.5
MONOCYTES_42
174.1
MONOCYTES_43
174.0
MONOCYTES_44
173.0
MONOCYTES_45
171.2
MONOCYTES_46
168.8
MONOCYTES_47
166.8
MONOCYTES_48
166.5
MONOCYTES_49
164.1
MONOCYTES_50
163.5
MONOCYTES_51
163.4
MONOCYTES_52
162.1
MONOCYTES_53
160.9
MONOCYTES_54
160.8
MONOCYTES_55
159.3
MONOCYTES_56
158.6
MONOCYTES_57
158.0
MONOCYTES_58
157.7
MONOCYTES_59
157.2
MONOCYTES_60
156.3
MONOCYTES_61
154.7
MONOCYTES_62
154.4
MONOCYTES_63
153.7
MONOCYTES_64
153.1
MONOCYTES_65
152.6
MONOCYTES_66
151.5
MONOCYTES_67
151.2
MONOCYTES_68
149.2
MONOCYTES_69
148.5
MONOCYTES_70
148.1
MONOCYTES_71
147.4
MONOCYTES_72
146.2
MONOCYTES_73
145.8
MONOCYTES_74
145.4
MONOCYTES_75
143.0
MONOCYTES_76
141.8
MONOCYTES_77
138.5
MONOCYTES_78
137.2
MONOCYTES_79
137.0
MONOCYTES_80
132.0
MONOCYTES_81
131.3
MONOCYTES_82
129.8
MONOCYTES_83
123.6
MONOCYTES_84
122.2
MONOCYTES_85
121.5
MONOCYTES_86
118.3
MONOCYTES_87
114.9
MONOCYTES_88
114.7
MONOCYTES_89
114.2
MONOCYTES_90
108.8
MONOCYTES_91
99.8
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Non-classical monocyte TPM: 85.5
Samples: 90
Max TPM: 169.5
Min TPM: 41.9
M2_1
169.5
M2_2
158.4
M2_3
153.5
M2_4
139.0
M2_5
133.3
M2_6
130.6
M2_7
127.2
M2_8
127.1
M2_9
124.0
M2_10
120.1
M2_11
118.3
M2_12
113.5
M2_13
113.1
M2_14
112.7
M2_15
110.6
M2_16
107.4
M2_17
101.5
M2_18
101.1
M2_19
99.7
M2_20
99.6
M2_21
97.1
M2_22
95.7
M2_23
95.0
M2_24
94.2
M2_25
91.4
M2_26
90.8
M2_27
90.7
M2_28
90.1
M2_29
90.0
M2_30
89.8
M2_31
89.3
M2_32
88.5
M2_33
87.3
M2_34
86.9
M2_35
86.8
M2_36
86.6
M2_37
86.6
M2_38
86.5
M2_39
86.4
M2_40
84.8
M2_41
83.3
M2_42
81.9
M2_43
81.6
M2_44
81.3
M2_45
80.9
M2_46
80.5
M2_47
80.3
M2_48
79.7
M2_49
79.5
M2_50
79.3
M2_51
76.8
M2_52
76.3
M2_53
76.2
M2_54
75.8
M2_55
75.5
M2_56
75.3
M2_57
75.3
M2_58
74.4
M2_59
74.3
M2_60
73.5
M2_61
73.4
M2_62
72.7
M2_63
72.3
M2_64
72.0
M2_65
71.4
M2_66
69.6
M2_67
69.1
M2_68
68.9
M2_69
68.9
M2_70
67.8
M2_71
67.4
M2_72
67.2
M2_73
66.9
M2_74
64.9
M2_75
64.1
M2_76
63.9
M2_77
63.3
M2_78
63.1
M2_79
63.1
M2_80
63.0
M2_81
59.0
M2_82
58.5
M2_83
56.8
M2_84
54.9
M2_85
54.5
M2_86
54.0
M2_87
53.9
M2_88
48.7
M2_89
47.2
M2_90
41.9
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