A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4746.4
nTPM
Monaco:
777.6
nTPM
Schmiedel:
567.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4746.4
HPA sample
nTPM
Memory B-cell nTPM: 4746.4
Samples: 6
Max nTPM: 5275.1
Min nTPM: 3885.6
P10809_1017
3885.6
P10809_1025
4558.3
P10809_1044
5165.0
P10809_1063
4985.6
P10809_1092
4608.9
P10809_1105
5275.1
Naive B-cell nTPM: 4250.7
Samples: 6
Max nTPM: 5013.4
Min nTPM: 3428.8
P10809_1011
3428.8
P10809_1029
3809.4
P10809_1048
4284.9
P10809_1067
4875.0
P10809_1091
4092.9
P10809_1104
5013.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
777.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 777.6
Samples: 4
Max nTPM: 1328.9
Min nTPM: 260.4
RHH5310_R3677
612.8
RHH5218_R3590
260.4
RHH5247_R3619
1328.9
RHH5276_R3648
908.3
Naive B-cell nTPM: 746.9
Samples: 4
Max nTPM: 1259.1
Min nTPM: 273.0
RHH5308_R3675
814.0
RHH5216_R3588
273.0
RHH5245_R3617
1259.1
RHH5274_R3646
641.6
Non-switched memory B-cell nTPM: 587.6
Samples: 4
Max nTPM: 983.0
Min nTPM: 287.1
RHH5309_R3676
736.6
RHH5217_R3589
343.8
RHH5246_R3618
287.1
RHH5275_R3647
983.0
Plasmablast nTPM: 464.1
Samples: 4
Max nTPM: 573.9
Min nTPM: 266.4
RHH5312_R3679
573.9
RHH5220_R3592
266.4
RHH5249_R3621
483.1
RHH5278_R3650
532.9
Switched memory B-cell nTPM: 545.1
Samples: 4
Max nTPM: 756.3
Min nTPM: 314.1
RHH5311_R3678
672.3
RHH5219_R3591
437.9
RHH5248_R3620
314.1
RHH5277_R3649
756.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
567.1
Schmiedel sample id
TPM
Naive B-cell TPM: 567.1
Samples: 91
Max TPM: 827.3
Min TPM: 127.9
B_CELL_NAIVE_1
827.3
B_CELL_NAIVE_2
804.5
B_CELL_NAIVE_3
789.7
B_CELL_NAIVE_4
773.6
B_CELL_NAIVE_5
736.2
B_CELL_NAIVE_6
724.6
B_CELL_NAIVE_7
720.9
B_CELL_NAIVE_8
697.8
B_CELL_NAIVE_9
697.0
B_CELL_NAIVE_10
694.2
B_CELL_NAIVE_11
692.1
B_CELL_NAIVE_12
668.0
B_CELL_NAIVE_13
659.0
B_CELL_NAIVE_14
649.2
B_CELL_NAIVE_15
644.2
B_CELL_NAIVE_16
643.8
B_CELL_NAIVE_17
641.4
B_CELL_NAIVE_18
639.5
B_CELL_NAIVE_19
637.9
B_CELL_NAIVE_20
637.6
B_CELL_NAIVE_21
635.1
B_CELL_NAIVE_22
629.4
B_CELL_NAIVE_23
622.2
B_CELL_NAIVE_24
620.2
B_CELL_NAIVE_25
619.8
B_CELL_NAIVE_26
610.9
B_CELL_NAIVE_27
607.8
B_CELL_NAIVE_28
597.0
B_CELL_NAIVE_29
596.5
B_CELL_NAIVE_30
595.6
B_CELL_NAIVE_31
590.5
B_CELL_NAIVE_32
590.4
B_CELL_NAIVE_33
590.0
B_CELL_NAIVE_34
582.9
B_CELL_NAIVE_35
581.1
B_CELL_NAIVE_36
573.5
B_CELL_NAIVE_37
573.5
B_CELL_NAIVE_38
572.0
B_CELL_NAIVE_39
571.9
B_CELL_NAIVE_40
570.8
B_CELL_NAIVE_41
566.5
B_CELL_NAIVE_42
566.2
B_CELL_NAIVE_43
565.3
B_CELL_NAIVE_44
564.7
B_CELL_NAIVE_45
563.8
B_CELL_NAIVE_46
559.8
B_CELL_NAIVE_47
554.3
B_CELL_NAIVE_48
549.9
B_CELL_NAIVE_49
549.7
B_CELL_NAIVE_50
549.2
B_CELL_NAIVE_51
548.3
B_CELL_NAIVE_52
547.9
B_CELL_NAIVE_53
546.0
B_CELL_NAIVE_54
544.9
B_CELL_NAIVE_55
543.0
B_CELL_NAIVE_56
539.7
B_CELL_NAIVE_57
534.5
B_CELL_NAIVE_58
532.0
B_CELL_NAIVE_59
531.9
B_CELL_NAIVE_60
530.5
B_CELL_NAIVE_61
529.6
B_CELL_NAIVE_62
528.3
B_CELL_NAIVE_63
526.1
B_CELL_NAIVE_64
522.6
B_CELL_NAIVE_65
521.8
B_CELL_NAIVE_66
518.9
B_CELL_NAIVE_67
517.9
B_CELL_NAIVE_68
517.6
B_CELL_NAIVE_69
517.0
B_CELL_NAIVE_70
515.7
B_CELL_NAIVE_71
515.5
B_CELL_NAIVE_72
514.9
B_CELL_NAIVE_73
506.9
B_CELL_NAIVE_74
503.5
B_CELL_NAIVE_75
497.7
B_CELL_NAIVE_76
497.2
B_CELL_NAIVE_77
489.4
B_CELL_NAIVE_78
488.4
B_CELL_NAIVE_79
487.0
B_CELL_NAIVE_80
483.8
B_CELL_NAIVE_81
474.1
B_CELL_NAIVE_82
469.8
B_CELL_NAIVE_83
468.3
B_CELL_NAIVE_84
460.0
B_CELL_NAIVE_85
456.6
B_CELL_NAIVE_86
456.1
B_CELL_NAIVE_87
446.5
B_CELL_NAIVE_88
445.0
B_CELL_NAIVE_89
404.9
B_CELL_NAIVE_90
298.8
B_CELL_NAIVE_91
127.9
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