A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1661.0
nTPM
Monaco:
394.6
nTPM
Schmiedel:
203.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1661.0
HPA sample
nTPM
Classical monocyte nTPM: 1661.0
Samples: 6
Max nTPM: 3021.8
Min nTPM: 1082.8
P10809_1003
3021.8
P10809_1020
1190.1
P10809_1039
1365.6
P10809_1058
1445.2
P10809_1080
1082.8
P10809_1107
1860.3
Intermediate monocyte nTPM: 1533.7
Samples: 6
Max nTPM: 2563.5
Min nTPM: 1021.3
P10809_1004
1021.3
P10809_1023
1634.3
P10809_1042
1480.3
P10809_1061
1040.4
P10809_1081
1462.3
P10809_1108
2563.5
Non-classical monocyte nTPM: 1395.4
Samples: 5
Max nTPM: 1923.8
Min nTPM: 1014.1
P10809_1005
1302.1
P10809_1053
1255.3
P10809_1072
1014.1
P10809_1082
1481.6
P10809_1109
1923.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
394.6
Monaco sample
nTPM
Classical monocyte nTPM: 224.8
Samples: 4
Max nTPM: 291.7
Min nTPM: 179.4
RHH5313_R3680
291.7
RHH5221_R3593
179.4
RHH5250_R3622
191.5
RHH5279_R3651
236.6
Intermediate monocyte nTPM: 394.6
Samples: 4
Max nTPM: 452.1
Min nTPM: 288.6
RHH5314_R3681
406.1
RHH5222_R3594
431.6
RHH5251_R3623
452.1
RHH5280_R3652
288.6
Non-classical monocyte nTPM: 266.3
Samples: 4
Max nTPM: 336.7
Min nTPM: 181.2
RHH5315_R3682
336.7
RHH5223_R3595
236.9
RHH5252_R3624
310.4
RHH5281_R3653
181.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
203.1
Schmiedel sample id
TPM
Classical monocyte TPM: 184.4
Samples: 91
Max TPM: 245.9
Min TPM: 138.7
MONOCYTES_1
245.9
MONOCYTES_2
239.9
MONOCYTES_3
236.6
MONOCYTES_4
235.4
MONOCYTES_5
222.3
MONOCYTES_6
217.1
MONOCYTES_7
216.6
MONOCYTES_8
212.2
MONOCYTES_9
212.2
MONOCYTES_10
209.9
MONOCYTES_11
209.5
MONOCYTES_12
207.0
MONOCYTES_13
205.8
MONOCYTES_14
202.0
MONOCYTES_15
201.5
MONOCYTES_16
200.7
MONOCYTES_17
199.5
MONOCYTES_18
199.5
MONOCYTES_19
198.3
MONOCYTES_20
195.0
MONOCYTES_21
194.7
MONOCYTES_22
194.4
MONOCYTES_23
194.3
MONOCYTES_24
194.1
MONOCYTES_25
194.0
MONOCYTES_26
193.7
MONOCYTES_27
193.5
MONOCYTES_28
193.4
MONOCYTES_29
193.4
MONOCYTES_30
191.5
MONOCYTES_31
191.2
MONOCYTES_32
191.1
MONOCYTES_33
191.0
MONOCYTES_34
190.1
MONOCYTES_35
190.0
MONOCYTES_36
189.5
MONOCYTES_37
189.3
MONOCYTES_38
188.6
MONOCYTES_39
188.3
MONOCYTES_40
188.1
MONOCYTES_41
187.7
MONOCYTES_42
186.8
MONOCYTES_43
186.4
MONOCYTES_44
186.3
MONOCYTES_45
184.6
MONOCYTES_46
184.3
MONOCYTES_47
183.9
MONOCYTES_48
183.8
MONOCYTES_49
183.7
MONOCYTES_50
183.2
MONOCYTES_51
182.7
MONOCYTES_52
181.8
MONOCYTES_53
181.8
MONOCYTES_54
180.1
MONOCYTES_55
177.8
MONOCYTES_56
177.6
MONOCYTES_57
177.3
MONOCYTES_58
176.9
MONOCYTES_59
176.8
MONOCYTES_60
175.5
MONOCYTES_61
175.3
MONOCYTES_62
175.3
MONOCYTES_63
175.3
MONOCYTES_64
173.5
MONOCYTES_65
173.4
MONOCYTES_66
173.2
MONOCYTES_67
172.6
MONOCYTES_68
172.6
MONOCYTES_69
171.8
MONOCYTES_70
170.7
MONOCYTES_71
168.0
MONOCYTES_72
166.7
MONOCYTES_73
166.2
MONOCYTES_74
165.6
MONOCYTES_75
164.8
MONOCYTES_76
164.7
MONOCYTES_77
164.3
MONOCYTES_78
161.2
MONOCYTES_79
158.5
MONOCYTES_80
156.7
MONOCYTES_81
156.2
MONOCYTES_82
156.1
MONOCYTES_83
156.0
MONOCYTES_84
155.4
MONOCYTES_85
155.4
MONOCYTES_86
154.0
MONOCYTES_87
153.0
MONOCYTES_88
150.7
MONOCYTES_89
149.8
MONOCYTES_90
145.7
MONOCYTES_91
138.7
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Non-classical monocyte TPM: 203.1
Samples: 90
Max TPM: 292.4
Min TPM: 143.2
M2_1
292.4
M2_2
266.3
M2_3
263.0
M2_4
261.3
M2_5
256.8
M2_6
252.5
M2_7
251.9
M2_8
247.8
M2_9
245.4
M2_10
240.0
M2_11
239.6
M2_12
238.3
M2_13
233.4
M2_14
232.8
M2_15
232.4
M2_16
229.4
M2_17
227.8
M2_18
226.5
M2_19
226.3
M2_20
225.2
M2_21
223.1
M2_22
222.8
M2_23
221.6
M2_24
220.7
M2_25
220.1
M2_26
219.5
M2_27
219.4
M2_28
217.2
M2_29
215.1
M2_30
213.3
M2_31
213.2
M2_32
212.3
M2_33
211.8
M2_34
210.4
M2_35
210.3
M2_36
210.2
M2_37
207.6
M2_38
206.1
M2_39
205.9
M2_40
203.0
M2_41
202.4
M2_42
200.4
M2_43
200.2
M2_44
200.0
M2_45
200.0
M2_46
197.5
M2_47
196.6
M2_48
196.4
M2_49
196.1
M2_50
196.0
M2_51
194.5
M2_52
194.3
M2_53
192.2
M2_54
191.7
M2_55
191.7
M2_56
191.4
M2_57
190.3
M2_58
190.1
M2_59
188.6
M2_60
187.9
M2_61
187.7
M2_62
187.1
M2_63
186.6
M2_64
186.4
M2_65
186.3
M2_66
186.2
M2_67
185.9
M2_68
185.2
M2_69
183.0
M2_70
182.9
M2_71
182.7
M2_72
180.8
M2_73
180.5
M2_74
177.5
M2_75
175.6
M2_76
175.4
M2_77
175.1
M2_78
174.6
M2_79
173.8
M2_80
172.3
M2_81
169.1
M2_82
166.6
M2_83
164.7
M2_84
164.3
M2_85
161.9
M2_86
158.0
M2_87
155.7
M2_88
152.4
M2_89
146.9
M2_90
143.2
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