A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3186.3
nTPM
Monaco:
310.6
nTPM
Schmiedel:
365.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3186.3
HPA sample
nTPM
NK-cell nTPM: 3186.3
Samples: 6
Max nTPM: 4008.2
Min nTPM: 1723.3
P10809_1013
3505.8
P10809_1033
3119.9
P10809_1052
3191.3
P10809_1071
4008.2
P10809_1093
1723.3
P10809_1103
3569.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
310.6
Monaco sample
nTPM
NK-cell nTPM: 310.6
Samples: 4
Max nTPM: 355.2
Min nTPM: 242.5
RHH5316_R3683
325.5
RHH5224_R3596
242.5
RHH5253_R3625
319.3
RHH5282_R3654
355.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
365.9
Schmiedel sample id
TPM
NK-cell TPM: 365.9
Samples: 90
Max TPM: 571.4
Min TPM: 243.9
NK_1
571.4
NK_2
568.3
NK_3
562.3
NK_4
534.4
NK_5
525.2
NK_6
500.8
NK_7
469.2
NK_8
467.2
NK_9
451.7
NK_10
450.5
NK_11
447.6
NK_12
442.7
NK_13
440.8
NK_14
440.6
NK_15
439.7
NK_16
437.0
NK_17
410.9
NK_18
408.3
NK_19
405.7
NK_20
401.1
NK_21
399.9
NK_22
399.3
NK_23
399.1
NK_24
398.7
NK_25
397.3
NK_26
396.1
NK_27
395.1
NK_28
394.4
NK_29
393.8
NK_30
392.0
NK_31
391.9
NK_32
391.7
NK_33
390.2
NK_34
390.2
NK_35
378.4
NK_36
377.3
NK_37
377.2
NK_38
376.2
NK_39
375.7
NK_40
372.9
NK_41
369.1
NK_42
366.6
NK_43
365.0
NK_44
363.6
NK_45
363.2
NK_46
363.2
NK_47
362.9
NK_48
362.1
NK_49
358.6
NK_50
357.4
NK_51
353.5
NK_52
347.7
NK_53
344.5
NK_54
344.3
NK_55
344.1
NK_56
343.1
NK_57
341.4
NK_58
338.9
NK_59
338.6
NK_60
338.0
NK_61
334.3
NK_62
333.5
NK_63
332.4
NK_64
326.4
NK_65
322.1
NK_66
322.1
NK_67
310.7
NK_68
307.4
NK_69
301.1
NK_70
299.9
NK_71
299.0
NK_72
298.7
NK_73
295.5
NK_74
295.3
NK_75
291.0
NK_76
290.3
NK_77
285.7
NK_78
285.5
NK_79
283.3
NK_80
279.2
NK_81
275.7
NK_82
274.0
NK_83
269.8
NK_84
264.4
NK_85
264.1
NK_86
263.5
NK_87
252.3
NK_88
252.1
NK_89
245.4
NK_90
243.9
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