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BETA
  • SUMMARY

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  • BRAIN

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  • RPL32
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:6006.6 nTPM
Monaco:717.2 nTPM
Schmiedel:914.1 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

6006.6
HPA sample nTPM
Memory B-cell
nTPM: 6006.6
Samples: 6

Max nTPM: 8998.4
Min nTPM: 4353.0
P10809_1017 4353.0
P10809_1025 5496.7
P10809_1044 8998.4
P10809_1063 5961.3
P10809_1092 5732.2
P10809_1105 5497.8
Naive B-cell
nTPM: 5439.3
Samples: 6

Max nTPM: 7314.5
Min nTPM: 4265.3
P10809_1011 4265.3
P10809_1029 5036.3
P10809_1048 7314.5
P10809_1067 5572.7
P10809_1091 5070.4
P10809_1104 5376.4

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

717.2
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 717.2
Samples: 4

Max nTPM: 1294.5
Min nTPM: 212.7
RHH5310_R3677 582.1
RHH5218_R3590 212.7
RHH5247_R3619 1294.5
RHH5276_R3648 779.4
Naive B-cell
nTPM: 627.6
Samples: 4

Max nTPM: 1077.7
Min nTPM: 249.6
RHH5308_R3675 666.4
RHH5216_R3588 249.6
RHH5245_R3617 1077.7
RHH5274_R3646 516.6
Non-switched memory B-cell
nTPM: 475.1
Samples: 4

Max nTPM: 711.7
Min nTPM: 270.9
RHH5309_R3676 632.1
RHH5217_R3589 285.5
RHH5246_R3618 270.9
RHH5275_R3647 711.7
Plasmablast
nTPM: 360.0
Samples: 4

Max nTPM: 438.7
Min nTPM: 230.5
RHH5312_R3679 435.8
RHH5220_R3592 230.5
RHH5249_R3621 334.9
RHH5278_R3650 438.7
Switched memory B-cell
nTPM: 475.7
Samples: 4

Max nTPM: 640.7
Min nTPM: 321.2
RHH5311_R3678 590.0
RHH5219_R3591 350.9
RHH5248_R3620 321.2
RHH5277_R3649 640.7

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

914.1
Schmiedel sample id TPM
Naive B-cell
TPM: 914.1
Samples: 91

Max TPM: 1197.0
Min TPM: 526.6
B_CELL_NAIVE_1 1197.0
B_CELL_NAIVE_2 1123.8
B_CELL_NAIVE_3 1099.8
B_CELL_NAIVE_4 1098.1
B_CELL_NAIVE_5 1091.1
B_CELL_NAIVE_6 1088.6
B_CELL_NAIVE_7 1053.3
B_CELL_NAIVE_8 1053.0
B_CELL_NAIVE_9 1048.1
B_CELL_NAIVE_10 1047.2
B_CELL_NAIVE_11 1030.9
B_CELL_NAIVE_12 1021.3
B_CELL_NAIVE_13 1019.1
B_CELL_NAIVE_14 1016.3
B_CELL_NAIVE_15 1010.2
B_CELL_NAIVE_16 1009.1
B_CELL_NAIVE_17 1003.5
B_CELL_NAIVE_18 1003.2
B_CELL_NAIVE_19 1000.4
B_CELL_NAIVE_20 997.0
B_CELL_NAIVE_21 991.4
B_CELL_NAIVE_22 980.1
B_CELL_NAIVE_23 966.5
B_CELL_NAIVE_24 963.7
B_CELL_NAIVE_25 960.8
B_CELL_NAIVE_26 960.1
B_CELL_NAIVE_27 960.0
B_CELL_NAIVE_28 958.6
B_CELL_NAIVE_29 955.0
B_CELL_NAIVE_30 953.7
B_CELL_NAIVE_31 952.8
B_CELL_NAIVE_32 950.9
B_CELL_NAIVE_33 947.3
B_CELL_NAIVE_34 943.9
B_CELL_NAIVE_35 943.8
B_CELL_NAIVE_36 943.7
B_CELL_NAIVE_37 942.4
B_CELL_NAIVE_38 941.0
B_CELL_NAIVE_39 936.3
B_CELL_NAIVE_40 935.5
B_CELL_NAIVE_41 935.3
B_CELL_NAIVE_42 935.0
B_CELL_NAIVE_43 934.2
B_CELL_NAIVE_44 934.2
B_CELL_NAIVE_45 932.5
B_CELL_NAIVE_46 931.3
B_CELL_NAIVE_47 928.3
B_CELL_NAIVE_48 928.3
B_CELL_NAIVE_49 923.3
B_CELL_NAIVE_50 922.8
B_CELL_NAIVE_51 921.1
B_CELL_NAIVE_52 919.9
B_CELL_NAIVE_53 912.4
B_CELL_NAIVE_54 912.0
B_CELL_NAIVE_55 910.9
B_CELL_NAIVE_56 907.0
B_CELL_NAIVE_57 906.0
B_CELL_NAIVE_58 902.2
B_CELL_NAIVE_59 901.3
B_CELL_NAIVE_60 899.3
B_CELL_NAIVE_61 896.0
B_CELL_NAIVE_62 883.4
B_CELL_NAIVE_63 877.7
B_CELL_NAIVE_64 877.1
B_CELL_NAIVE_65 875.1
B_CELL_NAIVE_66 869.9
B_CELL_NAIVE_67 868.1
B_CELL_NAIVE_68 868.1
B_CELL_NAIVE_69 866.8
B_CELL_NAIVE_70 861.0
B_CELL_NAIVE_71 855.7
B_CELL_NAIVE_72 854.9
B_CELL_NAIVE_73 850.7
B_CELL_NAIVE_74 846.1
B_CELL_NAIVE_75 840.8
B_CELL_NAIVE_76 839.4
B_CELL_NAIVE_77 821.5
B_CELL_NAIVE_78 819.9
B_CELL_NAIVE_79 812.9
B_CELL_NAIVE_80 803.2
B_CELL_NAIVE_81 792.7
B_CELL_NAIVE_82 776.0
B_CELL_NAIVE_83 764.7
B_CELL_NAIVE_84 758.8
B_CELL_NAIVE_85 754.4
B_CELL_NAIVE_86 709.7
B_CELL_NAIVE_87 650.3
B_CELL_NAIVE_88 632.3
B_CELL_NAIVE_89 627.3
B_CELL_NAIVE_90 604.7
B_CELL_NAIVE_91 526.6
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