A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6006.6
nTPM
Monaco:
717.2
nTPM
Schmiedel:
914.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6006.6
HPA sample
nTPM
Memory B-cell nTPM: 6006.6
Samples: 6
Max nTPM: 8998.4
Min nTPM: 4353.0
P10809_1017
4353.0
P10809_1025
5496.7
P10809_1044
8998.4
P10809_1063
5961.3
P10809_1092
5732.2
P10809_1105
5497.8
Naive B-cell nTPM: 5439.3
Samples: 6
Max nTPM: 7314.5
Min nTPM: 4265.3
P10809_1011
4265.3
P10809_1029
5036.3
P10809_1048
7314.5
P10809_1067
5572.7
P10809_1091
5070.4
P10809_1104
5376.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
717.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 717.2
Samples: 4
Max nTPM: 1294.5
Min nTPM: 212.7
RHH5310_R3677
582.1
RHH5218_R3590
212.7
RHH5247_R3619
1294.5
RHH5276_R3648
779.4
Naive B-cell nTPM: 627.6
Samples: 4
Max nTPM: 1077.7
Min nTPM: 249.6
RHH5308_R3675
666.4
RHH5216_R3588
249.6
RHH5245_R3617
1077.7
RHH5274_R3646
516.6
Non-switched memory B-cell nTPM: 475.1
Samples: 4
Max nTPM: 711.7
Min nTPM: 270.9
RHH5309_R3676
632.1
RHH5217_R3589
285.5
RHH5246_R3618
270.9
RHH5275_R3647
711.7
Plasmablast nTPM: 360.0
Samples: 4
Max nTPM: 438.7
Min nTPM: 230.5
RHH5312_R3679
435.8
RHH5220_R3592
230.5
RHH5249_R3621
334.9
RHH5278_R3650
438.7
Switched memory B-cell nTPM: 475.7
Samples: 4
Max nTPM: 640.7
Min nTPM: 321.2
RHH5311_R3678
590.0
RHH5219_R3591
350.9
RHH5248_R3620
321.2
RHH5277_R3649
640.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
914.1
Schmiedel sample id
TPM
Naive B-cell TPM: 914.1
Samples: 91
Max TPM: 1197.0
Min TPM: 526.6
B_CELL_NAIVE_1
1197.0
B_CELL_NAIVE_2
1123.8
B_CELL_NAIVE_3
1099.8
B_CELL_NAIVE_4
1098.1
B_CELL_NAIVE_5
1091.1
B_CELL_NAIVE_6
1088.6
B_CELL_NAIVE_7
1053.3
B_CELL_NAIVE_8
1053.0
B_CELL_NAIVE_9
1048.1
B_CELL_NAIVE_10
1047.2
B_CELL_NAIVE_11
1030.9
B_CELL_NAIVE_12
1021.3
B_CELL_NAIVE_13
1019.1
B_CELL_NAIVE_14
1016.3
B_CELL_NAIVE_15
1010.2
B_CELL_NAIVE_16
1009.1
B_CELL_NAIVE_17
1003.5
B_CELL_NAIVE_18
1003.2
B_CELL_NAIVE_19
1000.4
B_CELL_NAIVE_20
997.0
B_CELL_NAIVE_21
991.4
B_CELL_NAIVE_22
980.1
B_CELL_NAIVE_23
966.5
B_CELL_NAIVE_24
963.7
B_CELL_NAIVE_25
960.8
B_CELL_NAIVE_26
960.1
B_CELL_NAIVE_27
960.0
B_CELL_NAIVE_28
958.6
B_CELL_NAIVE_29
955.0
B_CELL_NAIVE_30
953.7
B_CELL_NAIVE_31
952.8
B_CELL_NAIVE_32
950.9
B_CELL_NAIVE_33
947.3
B_CELL_NAIVE_34
943.9
B_CELL_NAIVE_35
943.8
B_CELL_NAIVE_36
943.7
B_CELL_NAIVE_37
942.4
B_CELL_NAIVE_38
941.0
B_CELL_NAIVE_39
936.3
B_CELL_NAIVE_40
935.5
B_CELL_NAIVE_41
935.3
B_CELL_NAIVE_42
935.0
B_CELL_NAIVE_43
934.2
B_CELL_NAIVE_44
934.2
B_CELL_NAIVE_45
932.5
B_CELL_NAIVE_46
931.3
B_CELL_NAIVE_47
928.3
B_CELL_NAIVE_48
928.3
B_CELL_NAIVE_49
923.3
B_CELL_NAIVE_50
922.8
B_CELL_NAIVE_51
921.1
B_CELL_NAIVE_52
919.9
B_CELL_NAIVE_53
912.4
B_CELL_NAIVE_54
912.0
B_CELL_NAIVE_55
910.9
B_CELL_NAIVE_56
907.0
B_CELL_NAIVE_57
906.0
B_CELL_NAIVE_58
902.2
B_CELL_NAIVE_59
901.3
B_CELL_NAIVE_60
899.3
B_CELL_NAIVE_61
896.0
B_CELL_NAIVE_62
883.4
B_CELL_NAIVE_63
877.7
B_CELL_NAIVE_64
877.1
B_CELL_NAIVE_65
875.1
B_CELL_NAIVE_66
869.9
B_CELL_NAIVE_67
868.1
B_CELL_NAIVE_68
868.1
B_CELL_NAIVE_69
866.8
B_CELL_NAIVE_70
861.0
B_CELL_NAIVE_71
855.7
B_CELL_NAIVE_72
854.9
B_CELL_NAIVE_73
850.7
B_CELL_NAIVE_74
846.1
B_CELL_NAIVE_75
840.8
B_CELL_NAIVE_76
839.4
B_CELL_NAIVE_77
821.5
B_CELL_NAIVE_78
819.9
B_CELL_NAIVE_79
812.9
B_CELL_NAIVE_80
803.2
B_CELL_NAIVE_81
792.7
B_CELL_NAIVE_82
776.0
B_CELL_NAIVE_83
764.7
B_CELL_NAIVE_84
758.8
B_CELL_NAIVE_85
754.4
B_CELL_NAIVE_86
709.7
B_CELL_NAIVE_87
650.3
B_CELL_NAIVE_88
632.3
B_CELL_NAIVE_89
627.3
B_CELL_NAIVE_90
604.7
B_CELL_NAIVE_91
526.6
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