A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2355.1
nTPM
Monaco:
320.9
nTPM
Schmiedel:
483.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2355.1
HPA sample
nTPM
Classical monocyte nTPM: 2355.1
Samples: 6
Max nTPM: 4125.9
Min nTPM: 1484.4
P10809_1003
4125.9
P10809_1020
1846.7
P10809_1039
2230.6
P10809_1058
2038.1
P10809_1080
1484.4
P10809_1107
2405.0
Intermediate monocyte nTPM: 1805.1
Samples: 6
Max nTPM: 2846.9
Min nTPM: 1158.1
P10809_1004
1453.4
P10809_1023
1990.6
P10809_1042
1942.1
P10809_1061
1158.1
P10809_1081
1439.3
P10809_1108
2846.9
Non-classical monocyte nTPM: 1497.0
Samples: 5
Max nTPM: 2077.7
Min nTPM: 1143.3
P10809_1005
1561.8
P10809_1053
1460.1
P10809_1072
1143.3
P10809_1082
1241.9
P10809_1109
2077.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
320.9
Monaco sample
nTPM
Classical monocyte nTPM: 226.1
Samples: 4
Max nTPM: 266.1
Min nTPM: 149.2
RHH5313_R3680
265.3
RHH5221_R3593
223.7
RHH5250_R3622
149.2
RHH5279_R3651
266.1
Intermediate monocyte nTPM: 320.9
Samples: 4
Max nTPM: 413.6
Min nTPM: 203.7
RHH5314_R3681
315.2
RHH5222_R3594
413.6
RHH5251_R3623
351.2
RHH5280_R3652
203.7
Non-classical monocyte nTPM: 228.3
Samples: 4
Max nTPM: 300.0
Min nTPM: 136.8
RHH5315_R3682
300.0
RHH5223_R3595
231.8
RHH5252_R3624
244.4
RHH5281_R3653
136.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
483.8
Schmiedel sample id
TPM
Classical monocyte TPM: 483.8
Samples: 91
Max TPM: 593.6
Min TPM: 371.7
MONOCYTES_1
593.6
MONOCYTES_2
591.3
MONOCYTES_3
563.9
MONOCYTES_4
562.0
MONOCYTES_5
558.1
MONOCYTES_6
540.0
MONOCYTES_7
538.1
MONOCYTES_8
537.3
MONOCYTES_9
530.1
MONOCYTES_10
529.5
MONOCYTES_11
526.1
MONOCYTES_12
525.7
MONOCYTES_13
525.5
MONOCYTES_14
524.3
MONOCYTES_15
522.9
MONOCYTES_16
522.8
MONOCYTES_17
519.0
MONOCYTES_18
513.8
MONOCYTES_19
513.7
MONOCYTES_20
513.7
MONOCYTES_21
511.5
MONOCYTES_22
511.4
MONOCYTES_23
511.3
MONOCYTES_24
511.3
MONOCYTES_25
510.7
MONOCYTES_26
509.7
MONOCYTES_27
509.6
MONOCYTES_28
509.6
MONOCYTES_29
507.7
MONOCYTES_30
507.5
MONOCYTES_31
504.2
MONOCYTES_32
504.1
MONOCYTES_33
502.0
MONOCYTES_34
501.2
MONOCYTES_35
498.4
MONOCYTES_36
493.1
MONOCYTES_37
491.5
MONOCYTES_38
490.7
MONOCYTES_39
490.6
MONOCYTES_40
490.3
MONOCYTES_41
490.1
MONOCYTES_42
489.7
MONOCYTES_43
487.1
MONOCYTES_44
481.0
MONOCYTES_45
479.2
MONOCYTES_46
479.1
MONOCYTES_47
478.6
MONOCYTES_48
476.5
MONOCYTES_49
475.8
MONOCYTES_50
475.8
MONOCYTES_51
475.4
MONOCYTES_52
475.4
MONOCYTES_53
474.6
MONOCYTES_54
474.4
MONOCYTES_55
474.3
MONOCYTES_56
473.5
MONOCYTES_57
472.9
MONOCYTES_58
472.8
MONOCYTES_59
472.0
MONOCYTES_60
471.5
MONOCYTES_61
471.0
MONOCYTES_62
470.5
MONOCYTES_63
468.6
MONOCYTES_64
468.2
MONOCYTES_65
466.7
MONOCYTES_66
466.6
MONOCYTES_67
465.8
MONOCYTES_68
463.5
MONOCYTES_69
462.6
MONOCYTES_70
462.5
MONOCYTES_71
462.3
MONOCYTES_72
460.1
MONOCYTES_73
459.0
MONOCYTES_74
458.8
MONOCYTES_75
450.3
MONOCYTES_76
446.0
MONOCYTES_77
443.1
MONOCYTES_78
435.2
MONOCYTES_79
433.4
MONOCYTES_80
431.8
MONOCYTES_81
423.5
MONOCYTES_82
421.8
MONOCYTES_83
418.7
MONOCYTES_84
417.9
MONOCYTES_85
417.8
MONOCYTES_86
413.9
MONOCYTES_87
413.0
MONOCYTES_88
407.3
MONOCYTES_89
405.4
MONOCYTES_90
400.5
MONOCYTES_91
371.7
Show allShow less
Non-classical monocyte TPM: 343.0
Samples: 90
Max TPM: 469.0
Min TPM: 251.6
M2_1
469.0
M2_2
428.4
M2_3
424.9
M2_4
405.2
M2_5
395.8
M2_6
395.3
M2_7
395.2
M2_8
394.2
M2_9
392.3
M2_10
391.4
M2_11
385.2
M2_12
380.4
M2_13
379.6
M2_14
375.7
M2_15
373.4
M2_16
372.8
M2_17
371.9
M2_18
371.0
M2_19
369.7
M2_20
369.3
M2_21
368.9
M2_22
368.3
M2_23
368.0
M2_24
365.8
M2_25
363.1
M2_26
361.3
M2_27
361.0
M2_28
359.9
M2_29
359.6
M2_30
359.5
M2_31
357.7
M2_32
354.6
M2_33
354.2
M2_34
354.2
M2_35
353.6
M2_36
352.3
M2_37
351.2
M2_38
349.4
M2_39
349.2
M2_40
349.2
M2_41
349.1
M2_42
345.9
M2_43
344.7
M2_44
343.4
M2_45
342.9
M2_46
342.3
M2_47
342.2
M2_48
340.8
M2_49
340.4
M2_50
339.3
M2_51
337.5
M2_52
336.3
M2_53
336.2
M2_54
335.8
M2_55
335.1
M2_56
334.2
M2_57
334.0
M2_58
333.3
M2_59
332.2
M2_60
331.6
M2_61
328.7
M2_62
328.4
M2_63
327.4
M2_64
326.9
M2_65
323.2
M2_66
322.7
M2_67
322.2
M2_68
319.2
M2_69
319.1
M2_70
316.7
M2_71
314.2
M2_72
313.6
M2_73
313.5
M2_74
311.5
M2_75
311.2
M2_76
310.8
M2_77
310.6
M2_78
308.5
M2_79
294.3
M2_80
292.4
M2_81
288.5
M2_82
288.4
M2_83
287.4
M2_84
285.5
M2_85
283.4
M2_86
277.8
M2_87
276.6
M2_88
272.5
M2_89
263.5
M2_90
251.6
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.