A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2905.0
nTPM
Monaco:
202.9
nTPM
Schmiedel:
461.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2905.0
HPA sample
nTPM
NK-cell nTPM: 2905.0
Samples: 6
Max nTPM: 3830.7
Min nTPM: 1680.5
P10809_1013
2431.8
P10809_1033
3333.1
P10809_1052
3008.9
P10809_1071
3830.7
P10809_1093
1680.5
P10809_1103
3144.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
202.9
Monaco sample
nTPM
NK-cell nTPM: 202.9
Samples: 4
Max nTPM: 248.5
Min nTPM: 164.5
RHH5316_R3683
248.5
RHH5224_R3596
164.5
RHH5253_R3625
210.6
RHH5282_R3654
188.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
461.8
Schmiedel sample id
TPM
NK-cell TPM: 461.8
Samples: 90
Max TPM: 662.9
Min TPM: 334.6
NK_1
662.9
NK_2
626.4
NK_3
607.2
NK_4
581.6
NK_5
576.5
NK_6
564.0
NK_7
551.2
NK_8
545.9
NK_9
542.5
NK_10
538.8
NK_11
533.1
NK_12
532.3
NK_13
527.6
NK_14
527.3
NK_15
526.4
NK_16
525.7
NK_17
521.7
NK_18
518.9
NK_19
513.4
NK_20
508.8
NK_21
508.5
NK_22
501.6
NK_23
501.3
NK_24
501.1
NK_25
500.6
NK_26
498.0
NK_27
497.8
NK_28
494.2
NK_29
493.7
NK_30
493.5
NK_31
489.7
NK_32
484.5
NK_33
484.4
NK_34
483.9
NK_35
480.2
NK_36
476.2
NK_37
475.5
NK_38
475.3
NK_39
474.3
NK_40
471.2
NK_41
470.2
NK_42
469.9
NK_43
469.2
NK_44
468.1
NK_45
467.5
NK_46
460.2
NK_47
458.6
NK_48
457.7
NK_49
456.9
NK_50
455.1
NK_51
452.9
NK_52
448.9
NK_53
448.9
NK_54
448.0
NK_55
443.8
NK_56
442.1
NK_57
435.0
NK_58
432.5
NK_59
431.3
NK_60
431.0
NK_61
429.2
NK_62
427.3
NK_63
423.1
NK_64
422.3
NK_65
419.9
NK_66
417.9
NK_67
417.2
NK_68
413.5
NK_69
413.4
NK_70
413.1
NK_71
412.7
NK_72
410.1
NK_73
407.4
NK_74
402.9
NK_75
389.1
NK_76
387.6
NK_77
385.4
NK_78
385.3
NK_79
383.2
NK_80
382.2
NK_81
372.4
NK_82
370.5
NK_83
366.8
NK_84
363.2
NK_85
360.7
NK_86
359.3
NK_87
349.4
NK_88
339.2
NK_89
334.7
NK_90
334.6
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