MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.6 nTPM
HPA Brain:82.8 nTPM
GTEx:16.6 nTPM
FANTOM5:55.3 Scaled Tags Per Million
Pig:169.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 82.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.0
2019 Male, age 18, unknown 72.9
1827 Male, age 72, unknown 68.6
2666 Male, age 74, left hemisphere 51.7
2828 Female, age 72, unknown 49.6
2586 Male, age 75, left hemisphere 44.1
2411 Female, age 72, unknown 40.5
2219 Male, age 76, both hemispheres 39.0
1870 Female, age 42, unknown 36.6
1833 Male, age 53, unknown 29.9
1830 Male, age 51, unknown 26.9
Dorsal raphe nucleus
nTPM: 24.6
2298 Female, age 72, unknown 37.1
2750 Male, age 76, both hemispheres 26.9
1828 Male, age 53, unknown 22.5
2016 Female, age 72, unknown 20.9
2047 Male, age 72, unknown 15.6
Inferior colliculus
nTPM: 43.2
2097 Female, age 72, unknown 57.9
1848 Female, age 42, unknown 39.0
1890 Male, age 53, unknown 38.1
2849 Male, age 72, unknown 37.6
Median raphe nucleus
nTPM: 26.9
2220 Male, age 76, midline 26.9
Periaquaductal grey, anterior
nTPM: 58.3
1795 Male, age 51, unknown 74.2
2502 Female, age 75, unknown 51.7
1947 Male, age 18, unknown 49.0
Periaquaductal grey, dorsal
nTPM: 39.4
1831 Male, age 72, unknown 46.1
1840 Male, age 53, unknown 44.9
2464 Female, age 72, unknown 36.5
2850 Male, age 76, both hemispheres 30.0
Periaquaductal grey, lateral
nTPM: 38.3
2053 Male, age 18, unknown 41.0
2272 Male, age 74, both hemispheres 38.3
2140 Male, age 76, both hemispheres 35.4
Pretectal area
nTPM: 82.8
1816 Male, age 51, unknown 157.5
1815 Male, age 53, unknown 130.2
1817 Female, age 42, unknown 128.0
2007 Male, age 72, unknown 127.7
1944 Female, age 72, unknown 114.5
2667 Female, age 75, unknown 50.0
2224 Female, age 72, unknown 46.1
2316 Male, age 76, right hemisphere 41.3
2825 Male, age 18, unknown 39.8
2273 Male, age 74, both hemispheres 38.7
2407 Male, age 75, both hemispheres 37.5
Red nucleus
nTPM: 34.6
2785 Male, age 18, unknown 69.7
2725 Female, age 75, unknown 48.2
2503 Female, age 72, unknown 39.7
2584 Male, age 75, left hemisphere 37.7
1954 Female, age 42, unknown 30.7
2588 Male, age 74, left hemisphere 29.9
2823 Male, age 76, right hemisphere 28.9
1904 Male, age 53, unknown 28.4
1821 Female, age 72, unknown 28.3
1865 Male, age 51, unknown 27.2
2227 Male, age 72, unknown 23.7
2769 Male, age 72, unknown 22.7
Substantia nigra
nTPM: 44.9
1889 Female, age 72, unknown 87.3
1916 Female, age 42, unknown 58.1
2409 Female, age 72, unknown 47.7
1851 Male, age 51, unknown 42.1
2583 Male, age 75, right hemisphere 41.7
2590 Female, age 75, unknown 41.5
2241 Male, age 72, unknown 39.2
2665 Male, age 74, both hemispheres 37.8
1941 Male, age 53, unknown 36.4
2699 Male, age 18, unknown 16.9
Superior colliculus
nTPM: 58.8
2087 Female, age 72, unknown 94.6
1796 Male, age 53, unknown 78.1
2261 Male, age 18, unknown 74.9
1913 Female, age 42, unknown 60.5
2668 Female, age 75, unknown 60.4
1995 Male, age 72, unknown 59.4
1895 Male, age 76, right hemisphere 44.7
1839 Male, age 51, unknown 41.1
2664 Male, age 75, both hemispheres 40.0
2587 Male, age 74, left hemisphere 34.0
Ventral tegmental area
nTPM: 36.9
2410 Female, age 72, unknown 52.7
2218 Male, age 76, both hemispheres 40.6
1915 Female, age 42, unknown 34.3
2223 Female, age 72, unknown 33.8
1942 Male, age 51, unknown 32.7
2021 Male, age 53, unknown 27.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.6
Samples: 183

Max nTPM: 46.3
Min nTPM: 4.6
Std nTPM: 8.2
Median nTPM: 13.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 46.3
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 45.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 45.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 43.9
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 41.2
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 38.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 38.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 36.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 34.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 33.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 31.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 55.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.3
FF:10158-103A5 76 years, female 55.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 169.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 76.5
Samples: 4

Max nTPM: 90.5
Min nTPM: 67.1
Sample A Female 90.5
Sample B Female 71.1
Sample C Male 77.4
Sample D Male 67.1
Midbrain
nTPM: 169.1
Samples: 4

Max nTPM: 339.2
Min nTPM: 82.8
Sample A Female 89.2
Sample B Female 82.8
Sample C Male 339.2
Sample D Male 165.2
Periaqueductal gray
nTPM: 80.4
Samples: 3

Max nTPM: 87.8
Min nTPM: 75.4
Sample B Female 75.4
Sample C Male 87.8
Sample D Male 78.1
Superior colliculi
nTPM: 164.7
Samples: 4

Max nTPM: 258.9
Min nTPM: 126.0
Sample A Female 134.7
Sample B Female 126.0
Sample C Male 258.9
Sample D Male 139.3

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo