A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7184.9
nTPM
Monaco:
2623.2
nTPM
Schmiedel:
252.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7184.9
HPA sample
nTPM
Memory B-cell nTPM: 7184.9
Samples: 6
Max nTPM: 8903.9
Min nTPM: 4816.1
P10809_1017
4816.1
P10809_1025
8248.0
P10809_1044
8903.9
P10809_1063
7542.4
P10809_1092
7421.1
P10809_1105
6178.0
Naive B-cell nTPM: 6193.3
Samples: 6
Max nTPM: 8087.3
Min nTPM: 3942.3
P10809_1011
3942.3
P10809_1029
6684.3
P10809_1048
8087.3
P10809_1067
6730.5
P10809_1091
6046.3
P10809_1104
5669.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2623.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 2239.5
Samples: 4
Max nTPM: 3234.3
Min nTPM: 1247.7
RHH5310_R3677
2931.4
RHH5218_R3590
1247.7
RHH5247_R3619
3234.3
RHH5276_R3648
1544.7
Naive B-cell nTPM: 2335.1
Samples: 4
Max nTPM: 3588.4
Min nTPM: 1799.7
RHH5308_R3675
3588.4
RHH5216_R3588
1799.7
RHH5245_R3617
2123.6
RHH5274_R3646
1828.7
Non-switched memory B-cell nTPM: 2305.4
Samples: 4
Max nTPM: 3362.3
Min nTPM: 1773.3
RHH5309_R3676
3362.3
RHH5217_R3589
1773.3
RHH5246_R3618
2265.8
RHH5275_R3647
1820.1
Plasmablast nTPM: 1554.3
Samples: 4
Max nTPM: 1823.2
Min nTPM: 1235.1
RHH5312_R3679
1823.2
RHH5220_R3592
1393.3
RHH5249_R3621
1765.7
RHH5278_R3650
1235.1
Switched memory B-cell nTPM: 2623.2
Samples: 4
Max nTPM: 4344.8
Min nTPM: 1625.4
RHH5311_R3678
4344.8
RHH5219_R3591
2589.0
RHH5248_R3620
1933.5
RHH5277_R3649
1625.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
252.9
Schmiedel sample id
TPM
Naive B-cell TPM: 252.9
Samples: 91
Max TPM: 378.9
Min TPM: 66.4
B_CELL_NAIVE_1
378.9
B_CELL_NAIVE_2
377.9
B_CELL_NAIVE_3
321.2
B_CELL_NAIVE_4
320.9
B_CELL_NAIVE_5
318.4
B_CELL_NAIVE_6
317.8
B_CELL_NAIVE_7
313.7
B_CELL_NAIVE_8
302.6
B_CELL_NAIVE_9
298.7
B_CELL_NAIVE_10
298.1
B_CELL_NAIVE_11
297.1
B_CELL_NAIVE_12
296.5
B_CELL_NAIVE_13
295.4
B_CELL_NAIVE_14
293.8
B_CELL_NAIVE_15
292.9
B_CELL_NAIVE_16
292.5
B_CELL_NAIVE_17
292.0
B_CELL_NAIVE_18
291.1
B_CELL_NAIVE_19
289.0
B_CELL_NAIVE_20
286.5
B_CELL_NAIVE_21
283.4
B_CELL_NAIVE_22
282.8
B_CELL_NAIVE_23
282.5
B_CELL_NAIVE_24
282.1
B_CELL_NAIVE_25
280.2
B_CELL_NAIVE_26
277.6
B_CELL_NAIVE_27
277.0
B_CELL_NAIVE_28
275.1
B_CELL_NAIVE_29
271.1
B_CELL_NAIVE_30
270.2
B_CELL_NAIVE_31
270.2
B_CELL_NAIVE_32
268.5
B_CELL_NAIVE_33
268.1
B_CELL_NAIVE_34
267.9
B_CELL_NAIVE_35
267.3
B_CELL_NAIVE_36
266.3
B_CELL_NAIVE_37
265.2
B_CELL_NAIVE_38
265.1
B_CELL_NAIVE_39
265.0
B_CELL_NAIVE_40
262.6
B_CELL_NAIVE_41
260.6
B_CELL_NAIVE_42
257.3
B_CELL_NAIVE_43
256.9
B_CELL_NAIVE_44
254.3
B_CELL_NAIVE_45
254.0
B_CELL_NAIVE_46
253.3
B_CELL_NAIVE_47
252.3
B_CELL_NAIVE_48
249.0
B_CELL_NAIVE_49
247.4
B_CELL_NAIVE_50
246.3
B_CELL_NAIVE_51
244.3
B_CELL_NAIVE_52
242.0
B_CELL_NAIVE_53
241.6
B_CELL_NAIVE_54
240.4
B_CELL_NAIVE_55
239.8
B_CELL_NAIVE_56
239.6
B_CELL_NAIVE_57
237.9
B_CELL_NAIVE_58
237.3
B_CELL_NAIVE_59
236.3
B_CELL_NAIVE_60
236.1
B_CELL_NAIVE_61
234.5
B_CELL_NAIVE_62
233.7
B_CELL_NAIVE_63
232.8
B_CELL_NAIVE_64
232.7
B_CELL_NAIVE_65
232.7
B_CELL_NAIVE_66
231.9
B_CELL_NAIVE_67
230.4
B_CELL_NAIVE_68
228.2
B_CELL_NAIVE_69
228.0
B_CELL_NAIVE_70
228.0
B_CELL_NAIVE_71
225.7
B_CELL_NAIVE_72
225.6
B_CELL_NAIVE_73
225.0
B_CELL_NAIVE_74
223.9
B_CELL_NAIVE_75
223.2
B_CELL_NAIVE_76
219.4
B_CELL_NAIVE_77
216.7
B_CELL_NAIVE_78
214.6
B_CELL_NAIVE_79
210.0
B_CELL_NAIVE_80
208.9
B_CELL_NAIVE_81
205.5
B_CELL_NAIVE_82
203.9
B_CELL_NAIVE_83
200.6
B_CELL_NAIVE_84
196.3
B_CELL_NAIVE_85
196.0
B_CELL_NAIVE_86
195.8
B_CELL_NAIVE_87
191.0
B_CELL_NAIVE_88
181.7
B_CELL_NAIVE_89
181.1
B_CELL_NAIVE_90
140.2
B_CELL_NAIVE_91
66.4
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