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BETA
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  • RPS3A
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:7184.9 nTPM
Monaco:2623.2 nTPM
Schmiedel:252.9 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

7184.9
HPA sample nTPM
Memory B-cell
nTPM: 7184.9
Samples: 6

Max nTPM: 8903.9
Min nTPM: 4816.1
P10809_1017 4816.1
P10809_1025 8248.0
P10809_1044 8903.9
P10809_1063 7542.4
P10809_1092 7421.1
P10809_1105 6178.0
Naive B-cell
nTPM: 6193.3
Samples: 6

Max nTPM: 8087.3
Min nTPM: 3942.3
P10809_1011 3942.3
P10809_1029 6684.3
P10809_1048 8087.3
P10809_1067 6730.5
P10809_1091 6046.3
P10809_1104 5669.0

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

2623.2
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 2239.5
Samples: 4

Max nTPM: 3234.3
Min nTPM: 1247.7
RHH5310_R3677 2931.4
RHH5218_R3590 1247.7
RHH5247_R3619 3234.3
RHH5276_R3648 1544.7
Naive B-cell
nTPM: 2335.1
Samples: 4

Max nTPM: 3588.4
Min nTPM: 1799.7
RHH5308_R3675 3588.4
RHH5216_R3588 1799.7
RHH5245_R3617 2123.6
RHH5274_R3646 1828.7
Non-switched memory B-cell
nTPM: 2305.4
Samples: 4

Max nTPM: 3362.3
Min nTPM: 1773.3
RHH5309_R3676 3362.3
RHH5217_R3589 1773.3
RHH5246_R3618 2265.8
RHH5275_R3647 1820.1
Plasmablast
nTPM: 1554.3
Samples: 4

Max nTPM: 1823.2
Min nTPM: 1235.1
RHH5312_R3679 1823.2
RHH5220_R3592 1393.3
RHH5249_R3621 1765.7
RHH5278_R3650 1235.1
Switched memory B-cell
nTPM: 2623.2
Samples: 4

Max nTPM: 4344.8
Min nTPM: 1625.4
RHH5311_R3678 4344.8
RHH5219_R3591 2589.0
RHH5248_R3620 1933.5
RHH5277_R3649 1625.4

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

252.9
Schmiedel sample id TPM
Naive B-cell
TPM: 252.9
Samples: 91

Max TPM: 378.9
Min TPM: 66.4
B_CELL_NAIVE_1 378.9
B_CELL_NAIVE_2 377.9
B_CELL_NAIVE_3 321.2
B_CELL_NAIVE_4 320.9
B_CELL_NAIVE_5 318.4
B_CELL_NAIVE_6 317.8
B_CELL_NAIVE_7 313.7
B_CELL_NAIVE_8 302.6
B_CELL_NAIVE_9 298.7
B_CELL_NAIVE_10 298.1
B_CELL_NAIVE_11 297.1
B_CELL_NAIVE_12 296.5
B_CELL_NAIVE_13 295.4
B_CELL_NAIVE_14 293.8
B_CELL_NAIVE_15 292.9
B_CELL_NAIVE_16 292.5
B_CELL_NAIVE_17 292.0
B_CELL_NAIVE_18 291.1
B_CELL_NAIVE_19 289.0
B_CELL_NAIVE_20 286.5
B_CELL_NAIVE_21 283.4
B_CELL_NAIVE_22 282.8
B_CELL_NAIVE_23 282.5
B_CELL_NAIVE_24 282.1
B_CELL_NAIVE_25 280.2
B_CELL_NAIVE_26 277.6
B_CELL_NAIVE_27 277.0
B_CELL_NAIVE_28 275.1
B_CELL_NAIVE_29 271.1
B_CELL_NAIVE_30 270.2
B_CELL_NAIVE_31 270.2
B_CELL_NAIVE_32 268.5
B_CELL_NAIVE_33 268.1
B_CELL_NAIVE_34 267.9
B_CELL_NAIVE_35 267.3
B_CELL_NAIVE_36 266.3
B_CELL_NAIVE_37 265.2
B_CELL_NAIVE_38 265.1
B_CELL_NAIVE_39 265.0
B_CELL_NAIVE_40 262.6
B_CELL_NAIVE_41 260.6
B_CELL_NAIVE_42 257.3
B_CELL_NAIVE_43 256.9
B_CELL_NAIVE_44 254.3
B_CELL_NAIVE_45 254.0
B_CELL_NAIVE_46 253.3
B_CELL_NAIVE_47 252.3
B_CELL_NAIVE_48 249.0
B_CELL_NAIVE_49 247.4
B_CELL_NAIVE_50 246.3
B_CELL_NAIVE_51 244.3
B_CELL_NAIVE_52 242.0
B_CELL_NAIVE_53 241.6
B_CELL_NAIVE_54 240.4
B_CELL_NAIVE_55 239.8
B_CELL_NAIVE_56 239.6
B_CELL_NAIVE_57 237.9
B_CELL_NAIVE_58 237.3
B_CELL_NAIVE_59 236.3
B_CELL_NAIVE_60 236.1
B_CELL_NAIVE_61 234.5
B_CELL_NAIVE_62 233.7
B_CELL_NAIVE_63 232.8
B_CELL_NAIVE_64 232.7
B_CELL_NAIVE_65 232.7
B_CELL_NAIVE_66 231.9
B_CELL_NAIVE_67 230.4
B_CELL_NAIVE_68 228.2
B_CELL_NAIVE_69 228.0
B_CELL_NAIVE_70 228.0
B_CELL_NAIVE_71 225.7
B_CELL_NAIVE_72 225.6
B_CELL_NAIVE_73 225.0
B_CELL_NAIVE_74 223.9
B_CELL_NAIVE_75 223.2
B_CELL_NAIVE_76 219.4
B_CELL_NAIVE_77 216.7
B_CELL_NAIVE_78 214.6
B_CELL_NAIVE_79 210.0
B_CELL_NAIVE_80 208.9
B_CELL_NAIVE_81 205.5
B_CELL_NAIVE_82 203.9
B_CELL_NAIVE_83 200.6
B_CELL_NAIVE_84 196.3
B_CELL_NAIVE_85 196.0
B_CELL_NAIVE_86 195.8
B_CELL_NAIVE_87 191.0
B_CELL_NAIVE_88 181.7
B_CELL_NAIVE_89 181.1
B_CELL_NAIVE_90 140.2
B_CELL_NAIVE_91 66.4
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