A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5211.3
nTPM
Monaco:
787.3
nTPM
Schmiedel:
163.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5211.3
HPA sample
nTPM
NK-cell nTPM: 5211.3
Samples: 6
Max nTPM: 6936.7
Min nTPM: 3097.3
P10809_1013
4317.0
P10809_1033
5950.6
P10809_1052
5736.3
P10809_1071
6936.7
P10809_1093
3097.3
P10809_1103
5230.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
787.3
Monaco sample
nTPM
NK-cell nTPM: 787.2
Samples: 4
Max nTPM: 1112.7
Min nTPM: 561.3
RHH5316_R3683
1112.7
RHH5224_R3596
687.0
RHH5253_R3625
561.3
RHH5282_R3654
787.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
163.8
Schmiedel sample id
TPM
NK-cell TPM: 163.8
Samples: 90
Max TPM: 230.8
Min TPM: 119.3
NK_1
230.8
NK_2
216.0
NK_3
214.7
NK_4
211.0
NK_5
210.8
NK_6
208.1
NK_7
206.5
NK_8
205.5
NK_9
203.1
NK_10
200.6
NK_11
200.3
NK_12
197.7
NK_13
196.5
NK_14
195.9
NK_15
195.1
NK_16
189.3
NK_17
188.3
NK_18
185.9
NK_19
181.9
NK_20
181.8
NK_21
180.9
NK_22
180.7
NK_23
180.3
NK_24
179.7
NK_25
179.6
NK_26
177.5
NK_27
176.8
NK_28
174.4
NK_29
173.9
NK_30
173.7
NK_31
172.8
NK_32
172.6
NK_33
171.4
NK_34
168.4
NK_35
167.7
NK_36
167.3
NK_37
166.8
NK_38
164.1
NK_39
163.2
NK_40
163.2
NK_41
162.7
NK_42
162.2
NK_43
162.0
NK_44
161.6
NK_45
160.4
NK_46
159.7
NK_47
159.0
NK_48
159.0
NK_49
158.9
NK_50
158.7
NK_51
158.5
NK_52
157.7
NK_53
157.1
NK_54
156.9
NK_55
156.5
NK_56
155.3
NK_57
153.2
NK_58
152.5
NK_59
152.2
NK_60
150.9
NK_61
150.7
NK_62
148.5
NK_63
147.8
NK_64
147.2
NK_65
145.7
NK_66
144.5
NK_67
143.9
NK_68
142.8
NK_69
142.7
NK_70
141.6
NK_71
141.6
NK_72
141.6
NK_73
141.5
NK_74
141.2
NK_75
141.2
NK_76
140.0
NK_77
138.4
NK_78
134.3
NK_79
134.2
NK_80
133.8
NK_81
133.6
NK_82
132.3
NK_83
132.0
NK_84
130.6
NK_85
130.2
NK_86
126.5
NK_87
124.8
NK_88
122.6
NK_89
120.3
NK_90
119.3
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