A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3370.1
nTPM
Monaco:
1203.6
nTPM
Schmiedel:
98.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3370.1
HPA sample
nTPM
Classical monocyte nTPM: 3370.1
Samples: 6
Max nTPM: 6090.9
Min nTPM: 2292.6
P10809_1003
6090.9
P10809_1020
3186.4
P10809_1039
3353.4
P10809_1058
2764.3
P10809_1080
2292.6
P10809_1107
2532.8
Intermediate monocyte nTPM: 2630.7
Samples: 6
Max nTPM: 3578.6
Min nTPM: 1932.0
P10809_1004
1932.0
P10809_1023
3578.6
P10809_1042
2798.9
P10809_1061
2269.1
P10809_1081
2259.9
P10809_1108
2945.6
Non-classical monocyte nTPM: 2267.5
Samples: 5
Max nTPM: 2453.1
Min nTPM: 2079.1
P10809_1005
2079.1
P10809_1053
2415.3
P10809_1072
2143.7
P10809_1082
2246.3
P10809_1109
2453.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1203.6
Monaco sample
nTPM
Classical monocyte nTPM: 1203.6
Samples: 4
Max nTPM: 1559.2
Min nTPM: 729.8
RHH5313_R3680
1169.5
RHH5221_R3593
729.8
RHH5250_R3622
1559.2
RHH5279_R3651
1355.9
Intermediate monocyte nTPM: 1083.8
Samples: 4
Max nTPM: 1591.9
Min nTPM: 680.3
RHH5314_R3681
1591.9
RHH5222_R3594
680.3
RHH5251_R3623
929.9
RHH5280_R3652
1133.1
Non-classical monocyte nTPM: 793.8
Samples: 4
Max nTPM: 1086.8
Min nTPM: 502.3
RHH5315_R3682
1086.8
RHH5223_R3595
502.3
RHH5252_R3624
748.8
RHH5281_R3653
837.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
98.3
Schmiedel sample id
TPM
Classical monocyte TPM: 98.3
Samples: 91
Max TPM: 135.4
Min TPM: 69.0
MONOCYTES_1
135.4
MONOCYTES_2
133.8
MONOCYTES_3
130.3
MONOCYTES_4
128.1
MONOCYTES_5
127.9
MONOCYTES_6
126.3
MONOCYTES_7
118.3
MONOCYTES_8
115.6
MONOCYTES_9
115.6
MONOCYTES_10
114.1
MONOCYTES_11
113.1
MONOCYTES_12
113.0
MONOCYTES_13
112.4
MONOCYTES_14
111.9
MONOCYTES_15
110.4
MONOCYTES_16
109.8
MONOCYTES_17
109.2
MONOCYTES_18
108.8
MONOCYTES_19
108.7
MONOCYTES_20
108.1
MONOCYTES_21
107.0
MONOCYTES_22
107.0
MONOCYTES_23
106.9
MONOCYTES_24
106.7
MONOCYTES_25
106.2
MONOCYTES_26
106.0
MONOCYTES_27
104.9
MONOCYTES_28
104.9
MONOCYTES_29
104.3
MONOCYTES_30
104.0
MONOCYTES_31
102.7
MONOCYTES_32
102.5
MONOCYTES_33
102.3
MONOCYTES_34
102.1
MONOCYTES_35
101.5
MONOCYTES_36
100.3
MONOCYTES_37
100.2
MONOCYTES_38
99.1
MONOCYTES_39
98.7
MONOCYTES_40
98.7
MONOCYTES_41
98.7
MONOCYTES_42
98.0
MONOCYTES_43
97.9
MONOCYTES_44
97.7
MONOCYTES_45
97.7
MONOCYTES_46
97.1
MONOCYTES_47
96.6
MONOCYTES_48
96.1
MONOCYTES_49
96.1
MONOCYTES_50
96.0
MONOCYTES_51
96.0
MONOCYTES_52
95.9
MONOCYTES_53
95.4
MONOCYTES_54
95.3
MONOCYTES_55
95.3
MONOCYTES_56
94.7
MONOCYTES_57
94.0
MONOCYTES_58
93.9
MONOCYTES_59
93.7
MONOCYTES_60
92.6
MONOCYTES_61
92.2
MONOCYTES_62
92.1
MONOCYTES_63
91.8
MONOCYTES_64
91.8
MONOCYTES_65
91.7
MONOCYTES_66
91.6
MONOCYTES_67
91.3
MONOCYTES_68
91.0
MONOCYTES_69
89.2
MONOCYTES_70
88.4
MONOCYTES_71
88.1
MONOCYTES_72
87.9
MONOCYTES_73
87.9
MONOCYTES_74
86.9
MONOCYTES_75
86.6
MONOCYTES_76
86.4
MONOCYTES_77
86.3
MONOCYTES_78
83.9
MONOCYTES_79
82.0
MONOCYTES_80
81.8
MONOCYTES_81
81.8
MONOCYTES_82
81.5
MONOCYTES_83
79.7
MONOCYTES_84
78.4
MONOCYTES_85
77.6
MONOCYTES_86
76.9
MONOCYTES_87
76.6
MONOCYTES_88
74.7
MONOCYTES_89
74.0
MONOCYTES_90
70.4
MONOCYTES_91
69.0
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Non-classical monocyte TPM: 94.9
Samples: 90
Max TPM: 133.9
Min TPM: 66.3
M2_1
133.9
M2_2
133.9
M2_3
130.1
M2_4
125.5
M2_5
123.9
M2_6
122.9
M2_7
120.3
M2_8
117.4
M2_9
116.8
M2_10
116.6
M2_11
116.0
M2_12
115.3
M2_13
113.6
M2_14
112.8
M2_15
112.5
M2_16
111.3
M2_17
111.2
M2_18
111.0
M2_19
110.7
M2_20
110.5
M2_21
110.5
M2_22
110.3
M2_23
110.2
M2_24
109.8
M2_25
107.7
M2_26
107.6
M2_27
106.1
M2_28
103.7
M2_29
103.5
M2_30
103.1
M2_31
102.9
M2_32
102.7
M2_33
102.1
M2_34
100.5
M2_35
100.1
M2_36
99.3
M2_37
99.3
M2_38
98.5
M2_39
96.9
M2_40
96.0
M2_41
94.6
M2_42
93.5
M2_43
92.0
M2_44
91.9
M2_45
91.7
M2_46
91.3
M2_47
91.3
M2_48
91.1
M2_49
89.5
M2_50
88.9
M2_51
88.8
M2_52
88.6
M2_53
88.0
M2_54
87.7
M2_55
87.7
M2_56
87.6
M2_57
87.2
M2_58
86.2
M2_59
85.2
M2_60
84.7
M2_61
84.3
M2_62
83.8
M2_63
83.7
M2_64
83.3
M2_65
83.3
M2_66
82.3
M2_67
81.4
M2_68
81.4
M2_69
81.4
M2_70
80.5
M2_71
80.2
M2_72
79.9
M2_73
79.7
M2_74
78.6
M2_75
78.5
M2_76
77.8
M2_77
77.6
M2_78
77.4
M2_79
77.4
M2_80
76.0
M2_81
75.4
M2_82
75.0
M2_83
73.5
M2_84
72.4
M2_85
70.9
M2_86
70.7
M2_87
70.5
M2_88
70.2
M2_89
66.4
M2_90
66.3
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