A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.3
nTPM
Monaco:
26.2
nTPM
Schmiedel:
97.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.3
HPA sample
nTPM
Memory B-cell nTPM: 2.0
Samples: 6
Max nTPM: 3.1
Min nTPM: 1.2
P10809_1017
1.5
P10809_1025
1.3
P10809_1044
1.2
P10809_1063
3.1
P10809_1092
2.1
P10809_1105
2.5
Naive B-cell nTPM: 2.3
Samples: 6
Max nTPM: 2.8
Min nTPM: 1.3
P10809_1011
2.8
P10809_1029
1.3
P10809_1048
2.8
P10809_1067
2.4
P10809_1091
1.6
P10809_1104
2.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 17.4
Samples: 4
Max nTPM: 20.3
Min nTPM: 11.0
RHH5310_R3677
18.3
RHH5218_R3590
20.1
RHH5247_R3619
11.0
RHH5276_R3648
20.3
Naive B-cell nTPM: 26.2
Samples: 4
Max nTPM: 32.3
Min nTPM: 19.3
RHH5308_R3675
23.1
RHH5216_R3588
19.3
RHH5245_R3617
32.3
RHH5274_R3646
30.0
Non-switched memory B-cell nTPM: 20.5
Samples: 4
Max nTPM: 23.2
Min nTPM: 14.6
RHH5309_R3676
14.6
RHH5217_R3589
21.7
RHH5246_R3618
22.5
RHH5275_R3647
23.2
Plasmablast nTPM: 5.0
Samples: 4
Max nTPM: 5.8
Min nTPM: 3.6
RHH5312_R3679
5.2
RHH5220_R3592
5.8
RHH5249_R3621
5.4
RHH5278_R3650
3.6
Switched memory B-cell nTPM: 22.8
Samples: 4
Max nTPM: 26.0
Min nTPM: 19.8
RHH5311_R3678
26.0
RHH5219_R3591
19.8
RHH5248_R3620
21.0
RHH5277_R3649
24.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
97.2
Schmiedel sample id
TPM
Naive B-cell TPM: 97.2
Samples: 91
Max TPM: 154.0
Min TPM: 50.7
B_CELL_NAIVE_1
154.0
B_CELL_NAIVE_2
140.6
B_CELL_NAIVE_3
138.4
B_CELL_NAIVE_4
135.1
B_CELL_NAIVE_5
134.3
B_CELL_NAIVE_6
132.7
B_CELL_NAIVE_7
131.9
B_CELL_NAIVE_8
130.0
B_CELL_NAIVE_9
129.9
B_CELL_NAIVE_10
128.5
B_CELL_NAIVE_11
126.7
B_CELL_NAIVE_12
126.7
B_CELL_NAIVE_13
126.5
B_CELL_NAIVE_14
126.1
B_CELL_NAIVE_15
125.3
B_CELL_NAIVE_16
123.0
B_CELL_NAIVE_17
122.7
B_CELL_NAIVE_18
122.0
B_CELL_NAIVE_19
121.3
B_CELL_NAIVE_20
120.8
B_CELL_NAIVE_21
120.0
B_CELL_NAIVE_22
118.5
B_CELL_NAIVE_23
118.2
B_CELL_NAIVE_24
117.5
B_CELL_NAIVE_25
117.0
B_CELL_NAIVE_26
116.8
B_CELL_NAIVE_27
115.6
B_CELL_NAIVE_28
112.9
B_CELL_NAIVE_29
112.6
B_CELL_NAIVE_30
112.5
B_CELL_NAIVE_31
112.5
B_CELL_NAIVE_32
110.1
B_CELL_NAIVE_33
108.8
B_CELL_NAIVE_34
108.1
B_CELL_NAIVE_35
107.8
B_CELL_NAIVE_36
107.7
B_CELL_NAIVE_37
105.6
B_CELL_NAIVE_38
105.5
B_CELL_NAIVE_39
104.6
B_CELL_NAIVE_40
104.6
B_CELL_NAIVE_41
102.5
B_CELL_NAIVE_42
101.1
B_CELL_NAIVE_43
100.9
B_CELL_NAIVE_44
100.6
B_CELL_NAIVE_45
100.4
B_CELL_NAIVE_46
99.2
B_CELL_NAIVE_47
98.8
B_CELL_NAIVE_48
97.5
B_CELL_NAIVE_49
96.4
B_CELL_NAIVE_50
95.7
B_CELL_NAIVE_51
95.4
B_CELL_NAIVE_52
94.5
B_CELL_NAIVE_53
90.6
B_CELL_NAIVE_54
89.9
B_CELL_NAIVE_55
87.6
B_CELL_NAIVE_56
86.7
B_CELL_NAIVE_57
85.5
B_CELL_NAIVE_58
85.2
B_CELL_NAIVE_59
84.4
B_CELL_NAIVE_60
83.7
B_CELL_NAIVE_61
83.7
B_CELL_NAIVE_62
83.2
B_CELL_NAIVE_63
82.4
B_CELL_NAIVE_64
81.5
B_CELL_NAIVE_65
81.0
B_CELL_NAIVE_66
80.3
B_CELL_NAIVE_67
78.9
B_CELL_NAIVE_68
78.3
B_CELL_NAIVE_69
77.2
B_CELL_NAIVE_70
76.3
B_CELL_NAIVE_71
76.2
B_CELL_NAIVE_72
75.6
B_CELL_NAIVE_73
74.3
B_CELL_NAIVE_74
74.1
B_CELL_NAIVE_75
72.8
B_CELL_NAIVE_76
71.6
B_CELL_NAIVE_77
68.6
B_CELL_NAIVE_78
67.0
B_CELL_NAIVE_79
66.4
B_CELL_NAIVE_80
65.9
B_CELL_NAIVE_81
65.9
B_CELL_NAIVE_82
59.7
B_CELL_NAIVE_83
59.4
B_CELL_NAIVE_84
59.0
B_CELL_NAIVE_85
57.1
B_CELL_NAIVE_86
54.3
B_CELL_NAIVE_87
54.2
B_CELL_NAIVE_88
52.9
B_CELL_NAIVE_89
52.7
B_CELL_NAIVE_90
51.2
B_CELL_NAIVE_91
50.7
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
