A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.1
nTPM
Monaco:
27.7
nTPM
Schmiedel:
144.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.1
HPA sample
nTPM
NK-cell nTPM: 2.1
Samples: 6
Max nTPM: 3.3
Min nTPM: 0.0
P10809_1013
1.9
P10809_1033
2.0
P10809_1052
2.7
P10809_1071
3.3
P10809_1093
0.0
P10809_1103
2.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.7
Monaco sample
nTPM
NK-cell nTPM: 27.7
Samples: 4
Max nTPM: 29.8
Min nTPM: 23.6
RHH5316_R3683
28.0
RHH5224_R3596
29.8
RHH5253_R3625
23.6
RHH5282_R3654
29.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
144.8
Schmiedel sample id
TPM
NK-cell TPM: 144.8
Samples: 90
Max TPM: 224.4
Min TPM: 71.2
NK_1
224.4
NK_2
215.9
NK_3
213.4
NK_4
213.1
NK_5
212.2
NK_6
207.0
NK_7
206.6
NK_8
204.4
NK_9
202.8
NK_10
200.9
NK_11
193.6
NK_12
191.6
NK_13
191.6
NK_14
191.4
NK_15
187.5
NK_16
186.3
NK_17
186.2
NK_18
180.5
NK_19
180.4
NK_20
179.8
NK_21
178.5
NK_22
176.7
NK_23
175.0
NK_24
173.5
NK_25
169.9
NK_26
169.3
NK_27
169.2
NK_28
168.8
NK_29
166.9
NK_30
164.5
NK_31
163.8
NK_32
163.7
NK_33
161.7
NK_34
161.6
NK_35
160.4
NK_36
157.8
NK_37
157.3
NK_38
154.9
NK_39
154.9
NK_40
153.9
NK_41
153.1
NK_42
148.8
NK_43
147.8
NK_44
147.6
NK_45
147.6
NK_46
146.5
NK_47
143.8
NK_48
143.1
NK_49
141.6
NK_50
140.2
NK_51
135.5
NK_52
134.4
NK_53
134.3
NK_54
131.2
NK_55
130.2
NK_56
128.9
NK_57
128.6
NK_58
128.2
NK_59
127.8
NK_60
126.5
NK_61
125.7
NK_62
124.8
NK_63
121.9
NK_64
119.5
NK_65
119.0
NK_66
117.6
NK_67
117.6
NK_68
115.1
NK_69
113.8
NK_70
113.8
NK_71
113.4
NK_72
109.7
NK_73
103.3
NK_74
101.2
NK_75
99.9
NK_76
99.5
NK_77
98.4
NK_78
97.9
NK_79
94.7
NK_80
93.5
NK_81
89.4
NK_82
88.3
NK_83
86.5
NK_84
86.4
NK_85
82.3
NK_86
74.3
NK_87
73.3
NK_88
71.8
NK_89
71.3
NK_90
71.2
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