A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.8
nTPM
Monaco:
27.0
nTPM
Schmiedel:
74.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.8
HPA sample
nTPM
Classical monocyte nTPM: 1.5
Samples: 6
Max nTPM: 1.8
Min nTPM: 1.0
P10809_1003
1.6
P10809_1020
1.5
P10809_1039
1.0
P10809_1058
1.6
P10809_1080
1.8
P10809_1107
1.8
Intermediate monocyte nTPM: 1.8
Samples: 6
Max nTPM: 2.6
Min nTPM: 0.9
P10809_1004
2.0
P10809_1023
0.9
P10809_1042
2.1
P10809_1061
1.2
P10809_1081
2.1
P10809_1108
2.6
Non-classical monocyte nTPM: 1.6
Samples: 5
Max nTPM: 2.9
Min nTPM: 0.8
P10809_1005
1.6
P10809_1053
0.9
P10809_1072
2.9
P10809_1082
1.7
P10809_1109
0.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.0
Monaco sample
nTPM
Classical monocyte nTPM: 20.6
Samples: 4
Max nTPM: 22.8
Min nTPM: 19.2
RHH5313_R3680
22.8
RHH5221_R3593
19.2
RHH5250_R3622
20.5
RHH5279_R3651
20.0
Intermediate monocyte nTPM: 27.0
Samples: 4
Max nTPM: 42.2
Min nTPM: 16.9
RHH5314_R3681
16.9
RHH5222_R3594
24.0
RHH5251_R3623
42.2
RHH5280_R3652
25.0
Non-classical monocyte nTPM: 19.3
Samples: 4
Max nTPM: 21.3
Min nTPM: 16.5
RHH5315_R3682
18.6
RHH5223_R3595
20.6
RHH5252_R3624
21.3
RHH5281_R3653
16.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.7
Schmiedel sample id
TPM
Classical monocyte TPM: 73.8
Samples: 91
Max TPM: 117.8
Min TPM: 42.9
MONOCYTES_1
117.8
MONOCYTES_2
111.0
MONOCYTES_3
105.3
MONOCYTES_4
103.5
MONOCYTES_5
99.3
MONOCYTES_6
99.1
MONOCYTES_7
98.5
MONOCYTES_8
98.0
MONOCYTES_9
97.9
MONOCYTES_10
96.8
MONOCYTES_11
96.3
MONOCYTES_12
95.6
MONOCYTES_13
95.6
MONOCYTES_14
93.7
MONOCYTES_15
93.0
MONOCYTES_16
92.4
MONOCYTES_17
91.9
MONOCYTES_18
91.9
MONOCYTES_19
90.2
MONOCYTES_20
90.1
MONOCYTES_21
89.9
MONOCYTES_22
86.9
MONOCYTES_23
86.1
MONOCYTES_24
85.5
MONOCYTES_25
85.3
MONOCYTES_26
85.1
MONOCYTES_27
84.4
MONOCYTES_28
82.8
MONOCYTES_29
82.5
MONOCYTES_30
81.9
MONOCYTES_31
81.8
MONOCYTES_32
81.7
MONOCYTES_33
80.7
MONOCYTES_34
79.6
MONOCYTES_35
78.2
MONOCYTES_36
78.0
MONOCYTES_37
77.6
MONOCYTES_38
77.3
MONOCYTES_39
77.2
MONOCYTES_40
77.1
MONOCYTES_41
77.0
MONOCYTES_42
75.9
MONOCYTES_43
75.3
MONOCYTES_44
75.2
MONOCYTES_45
74.6
MONOCYTES_46
73.6
MONOCYTES_47
72.7
MONOCYTES_48
72.1
MONOCYTES_49
72.1
MONOCYTES_50
70.8
MONOCYTES_51
70.4
MONOCYTES_52
70.2
MONOCYTES_53
70.2
MONOCYTES_54
68.8
MONOCYTES_55
67.5
MONOCYTES_56
66.8
MONOCYTES_57
66.6
MONOCYTES_58
66.2
MONOCYTES_59
65.0
MONOCYTES_60
64.6
MONOCYTES_61
63.5
MONOCYTES_62
63.5
MONOCYTES_63
63.0
MONOCYTES_64
62.2
MONOCYTES_65
61.2
MONOCYTES_66
60.5
MONOCYTES_67
60.0
MONOCYTES_68
59.3
MONOCYTES_69
59.2
MONOCYTES_70
59.2
MONOCYTES_71
58.2
MONOCYTES_72
58.1
MONOCYTES_73
57.9
MONOCYTES_74
57.8
MONOCYTES_75
57.7
MONOCYTES_76
56.0
MONOCYTES_77
54.9
MONOCYTES_78
54.2
MONOCYTES_79
54.1
MONOCYTES_80
53.1
MONOCYTES_81
52.1
MONOCYTES_82
51.9
MONOCYTES_83
51.5
MONOCYTES_84
49.0
MONOCYTES_85
47.2
MONOCYTES_86
47.2
MONOCYTES_87
47.2
MONOCYTES_88
46.3
MONOCYTES_89
46.0
MONOCYTES_90
44.8
MONOCYTES_91
42.9
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Non-classical monocyte TPM: 74.7
Samples: 90
Max TPM: 117.0
Min TPM: 39.2
M2_1
117.0
M2_2
114.9
M2_3
110.6
M2_4
109.0
M2_5
104.3
M2_6
103.1
M2_7
103.1
M2_8
103.1
M2_9
101.8
M2_10
100.9
M2_11
100.5
M2_12
100.2
M2_13
95.9
M2_14
94.8
M2_15
93.8
M2_16
93.2
M2_17
90.8
M2_18
90.8
M2_19
89.7
M2_20
88.6
M2_21
88.3
M2_22
87.9
M2_23
86.7
M2_24
86.3
M2_25
85.8
M2_26
85.5
M2_27
85.4
M2_28
85.0
M2_29
85.0
M2_30
84.1
M2_31
83.9
M2_32
83.8
M2_33
80.3
M2_34
80.2
M2_35
80.2
M2_36
78.8
M2_37
78.7
M2_38
78.2
M2_39
78.0
M2_40
78.0
M2_41
77.6
M2_42
77.5
M2_43
76.9
M2_44
76.6
M2_45
76.3
M2_46
76.2
M2_47
76.1
M2_48
75.8
M2_49
75.5
M2_50
75.3
M2_51
73.5
M2_52
72.6
M2_53
71.5
M2_54
70.3
M2_55
70.3
M2_56
69.2
M2_57
69.1
M2_58
68.6
M2_59
67.9
M2_60
65.9
M2_61
65.7
M2_62
65.7
M2_63
64.9
M2_64
64.2
M2_65
63.9
M2_66
62.7
M2_67
61.7
M2_68
58.5
M2_69
57.8
M2_70
55.2
M2_71
54.9
M2_72
54.9
M2_73
54.2
M2_74
53.2
M2_75
53.1
M2_76
51.8
M2_77
51.6
M2_78
51.3
M2_79
51.2
M2_80
49.8
M2_81
49.2
M2_82
48.7
M2_83
48.3
M2_84
47.6
M2_85
46.1
M2_86
45.0
M2_87
42.5
M2_88
40.8
M2_89
40.2
M2_90
39.2
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