A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.0
nTPM
Monaco:
35.2
nTPM
Schmiedel:
65.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.0
HPA sample
nTPM
Memory B-cell nTPM: 4.0
Samples: 6
Max nTPM: 5.0
Min nTPM: 1.5
P10809_1017
3.8
P10809_1025
5.0
P10809_1044
1.5
P10809_1063
4.3
P10809_1092
4.2
P10809_1105
4.9
Naive B-cell nTPM: 6.1
Samples: 6
Max nTPM: 14.2
Min nTPM: 2.8
P10809_1011
2.8
P10809_1029
3.6
P10809_1048
14.2
P10809_1067
3.0
P10809_1091
5.7
P10809_1104
7.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 18.8
Samples: 4
Max nTPM: 26.9
Min nTPM: 11.6
RHH5310_R3677
13.8
RHH5218_R3590
26.9
RHH5247_R3619
22.7
RHH5276_R3648
11.6
Naive B-cell nTPM: 16.0
Samples: 4
Max nTPM: 18.1
Min nTPM: 13.5
RHH5308_R3675
14.3
RHH5216_R3588
13.5
RHH5245_R3617
18.0
RHH5274_R3646
18.1
Non-switched memory B-cell nTPM: 14.8
Samples: 4
Max nTPM: 16.0
Min nTPM: 11.2
RHH5309_R3676
15.9
RHH5217_R3589
15.9
RHH5246_R3618
11.2
RHH5275_R3647
16.0
Plasmablast nTPM: 35.2
Samples: 4
Max nTPM: 41.7
Min nTPM: 29.4
RHH5312_R3679
35.8
RHH5220_R3592
41.7
RHH5249_R3621
34.0
RHH5278_R3650
29.4
Switched memory B-cell nTPM: 19.8
Samples: 4
Max nTPM: 20.1
Min nTPM: 19.2
RHH5311_R3678
20.1
RHH5219_R3591
19.2
RHH5248_R3620
20.0
RHH5277_R3649
19.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
65.8
Schmiedel sample id
TPM
Naive B-cell TPM: 65.8
Samples: 91
Max TPM: 96.4
Min TPM: 49.5
B_CELL_NAIVE_1
96.4
B_CELL_NAIVE_2
95.9
B_CELL_NAIVE_3
89.7
B_CELL_NAIVE_4
89.6
B_CELL_NAIVE_5
87.9
B_CELL_NAIVE_6
81.7
B_CELL_NAIVE_7
80.7
B_CELL_NAIVE_8
80.3
B_CELL_NAIVE_9
77.4
B_CELL_NAIVE_10
77.1
B_CELL_NAIVE_11
77.0
B_CELL_NAIVE_12
76.8
B_CELL_NAIVE_13
75.5
B_CELL_NAIVE_14
75.1
B_CELL_NAIVE_15
73.4
B_CELL_NAIVE_16
73.3
B_CELL_NAIVE_17
73.2
B_CELL_NAIVE_18
72.4
B_CELL_NAIVE_19
72.4
B_CELL_NAIVE_20
72.2
B_CELL_NAIVE_21
71.8
B_CELL_NAIVE_22
71.7
B_CELL_NAIVE_23
71.2
B_CELL_NAIVE_24
70.9
B_CELL_NAIVE_25
70.8
B_CELL_NAIVE_26
70.7
B_CELL_NAIVE_27
69.6
B_CELL_NAIVE_28
68.7
B_CELL_NAIVE_29
67.8
B_CELL_NAIVE_30
67.2
B_CELL_NAIVE_31
66.6
B_CELL_NAIVE_32
66.6
B_CELL_NAIVE_33
66.4
B_CELL_NAIVE_34
66.2
B_CELL_NAIVE_35
65.9
B_CELL_NAIVE_36
65.7
B_CELL_NAIVE_37
65.7
B_CELL_NAIVE_38
65.7
B_CELL_NAIVE_39
65.6
B_CELL_NAIVE_40
65.1
B_CELL_NAIVE_41
65.1
B_CELL_NAIVE_42
65.0
B_CELL_NAIVE_43
64.7
B_CELL_NAIVE_44
64.7
B_CELL_NAIVE_45
64.5
B_CELL_NAIVE_46
64.5
B_CELL_NAIVE_47
64.5
B_CELL_NAIVE_48
64.3
B_CELL_NAIVE_49
63.9
B_CELL_NAIVE_50
63.5
B_CELL_NAIVE_51
63.4
B_CELL_NAIVE_52
63.3
B_CELL_NAIVE_53
63.3
B_CELL_NAIVE_54
63.3
B_CELL_NAIVE_55
63.0
B_CELL_NAIVE_56
62.5
B_CELL_NAIVE_57
62.4
B_CELL_NAIVE_58
62.3
B_CELL_NAIVE_59
61.8
B_CELL_NAIVE_60
61.5
B_CELL_NAIVE_61
61.3
B_CELL_NAIVE_62
61.1
B_CELL_NAIVE_63
61.0
B_CELL_NAIVE_64
60.9
B_CELL_NAIVE_65
59.6
B_CELL_NAIVE_66
59.5
B_CELL_NAIVE_67
59.1
B_CELL_NAIVE_68
58.6
B_CELL_NAIVE_69
58.4
B_CELL_NAIVE_70
58.4
B_CELL_NAIVE_71
58.1
B_CELL_NAIVE_72
58.0
B_CELL_NAIVE_73
57.2
B_CELL_NAIVE_74
57.2
B_CELL_NAIVE_75
57.2
B_CELL_NAIVE_76
57.1
B_CELL_NAIVE_77
57.0
B_CELL_NAIVE_78
56.8
B_CELL_NAIVE_79
56.7
B_CELL_NAIVE_80
56.6
B_CELL_NAIVE_81
56.2
B_CELL_NAIVE_82
56.0
B_CELL_NAIVE_83
55.7
B_CELL_NAIVE_84
54.5
B_CELL_NAIVE_85
53.8
B_CELL_NAIVE_86
53.5
B_CELL_NAIVE_87
53.3
B_CELL_NAIVE_88
53.1
B_CELL_NAIVE_89
51.5
B_CELL_NAIVE_90
50.7
B_CELL_NAIVE_91
49.5
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