A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.1
nTPM
Monaco:
17.6
nTPM
Schmiedel:
60.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.1
HPA sample
nTPM
NK-cell nTPM: 5.1
Samples: 6
Max nTPM: 9.3
Min nTPM: 1.7
P10809_1013
4.0
P10809_1033
2.0
P10809_1052
4.7
P10809_1071
9.0
P10809_1093
1.7
P10809_1103
9.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.6
Monaco sample
nTPM
NK-cell nTPM: 17.6
Samples: 4
Max nTPM: 26.5
Min nTPM: 9.6
RHH5316_R3683
15.5
RHH5224_R3596
9.6
RHH5253_R3625
18.9
RHH5282_R3654
26.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
60.6
Schmiedel sample id
TPM
NK-cell TPM: 60.6
Samples: 90
Max TPM: 88.8
Min TPM: 37.1
NK_1
88.8
NK_2
87.8
NK_3
86.9
NK_4
86.8
NK_5
81.8
NK_6
81.3
NK_7
79.9
NK_8
79.5
NK_9
78.1
NK_10
76.5
NK_11
75.5
NK_12
74.6
NK_13
73.8
NK_14
72.9
NK_15
72.7
NK_16
72.4
NK_17
71.8
NK_18
70.5
NK_19
70.1
NK_20
69.2
NK_21
68.9
NK_22
68.2
NK_23
68.1
NK_24
67.8
NK_25
67.1
NK_26
67.1
NK_27
66.8
NK_28
66.6
NK_29
66.4
NK_30
65.9
NK_31
65.1
NK_32
65.0
NK_33
64.0
NK_34
63.6
NK_35
63.1
NK_36
63.1
NK_37
63.0
NK_38
62.9
NK_39
62.5
NK_40
62.5
NK_41
62.5
NK_42
62.1
NK_43
61.9
NK_44
61.5
NK_45
61.3
NK_46
61.3
NK_47
60.6
NK_48
60.2
NK_49
60.2
NK_50
60.0
NK_51
59.7
NK_52
59.5
NK_53
58.9
NK_54
58.7
NK_55
58.2
NK_56
56.9
NK_57
56.7
NK_58
56.7
NK_59
56.3
NK_60
56.3
NK_61
56.0
NK_62
54.5
NK_63
53.7
NK_64
52.9
NK_65
52.8
NK_66
51.1
NK_67
51.1
NK_68
50.7
NK_69
50.4
NK_70
48.5
NK_71
48.1
NK_72
48.1
NK_73
47.7
NK_74
47.6
NK_75
47.0
NK_76
46.6
NK_77
45.5
NK_78
45.3
NK_79
45.1
NK_80
44.8
NK_81
44.8
NK_82
44.7
NK_83
44.6
NK_84
44.1
NK_85
42.1
NK_86
40.9
NK_87
40.8
NK_88
40.3
NK_89
39.7
NK_90
37.1
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