A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.9
nTPM
Monaco:
27.1
nTPM
Schmiedel:
62.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.9
HPA sample
nTPM
Classical monocyte nTPM: 3.4
Samples: 6
Max nTPM: 4.4
Min nTPM: 2.4
P10809_1003
3.1
P10809_1020
2.4
P10809_1039
3.6
P10809_1058
3.9
P10809_1080
3.2
P10809_1107
4.4
Intermediate monocyte nTPM: 5.1
Samples: 6
Max nTPM: 7.7
Min nTPM: 3.2
P10809_1004
4.3
P10809_1023
4.7
P10809_1042
3.2
P10809_1061
7.7
P10809_1081
4.2
P10809_1108
6.2
Non-classical monocyte nTPM: 5.8
Samples: 5
Max nTPM: 8.1
Min nTPM: 3.5
P10809_1005
7.2
P10809_1053
3.5
P10809_1072
5.7
P10809_1082
4.7
P10809_1109
8.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.1
Monaco sample
nTPM
Classical monocyte nTPM: 27.2
Samples: 4
Max nTPM: 31.9
Min nTPM: 22.5
RHH5313_R3680
31.9
RHH5221_R3593
25.3
RHH5250_R3622
22.5
RHH5279_R3651
28.9
Intermediate monocyte nTPM: 16.7
Samples: 4
Max nTPM: 17.4
Min nTPM: 15.9
RHH5314_R3681
15.9
RHH5222_R3594
17.4
RHH5251_R3623
17.3
RHH5280_R3652
16.3
Non-classical monocyte nTPM: 21.3
Samples: 4
Max nTPM: 32.6
Min nTPM: 12.1
RHH5315_R3682
19.3
RHH5223_R3595
12.1
RHH5252_R3624
21.0
RHH5281_R3653
32.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
62.1
Schmiedel sample id
TPM
Classical monocyte TPM: 44.0
Samples: 91
Max TPM: 56.8
Min TPM: 34.4
MONOCYTES_1
56.8
MONOCYTES_2
54.5
MONOCYTES_3
54.3
MONOCYTES_4
53.5
MONOCYTES_5
53.4
MONOCYTES_6
53.2
MONOCYTES_7
52.4
MONOCYTES_8
51.0
MONOCYTES_9
50.5
MONOCYTES_10
50.4
MONOCYTES_11
50.3
MONOCYTES_12
50.1
MONOCYTES_13
49.9
MONOCYTES_14
49.9
MONOCYTES_15
49.7
MONOCYTES_16
49.6
MONOCYTES_17
49.6
MONOCYTES_18
48.5
MONOCYTES_19
48.5
MONOCYTES_20
48.4
MONOCYTES_21
48.3
MONOCYTES_22
48.2
MONOCYTES_23
48.2
MONOCYTES_24
48.0
MONOCYTES_25
47.9
MONOCYTES_26
47.9
MONOCYTES_27
47.4
MONOCYTES_28
47.1
MONOCYTES_29
47.0
MONOCYTES_30
45.9
MONOCYTES_31
45.9
MONOCYTES_32
45.8
MONOCYTES_33
45.8
MONOCYTES_34
45.7
MONOCYTES_35
45.3
MONOCYTES_36
45.3
MONOCYTES_37
45.2
MONOCYTES_38
45.2
MONOCYTES_39
45.2
MONOCYTES_40
44.9
MONOCYTES_41
44.6
MONOCYTES_42
44.5
MONOCYTES_43
44.3
MONOCYTES_44
44.3
MONOCYTES_45
44.0
MONOCYTES_46
43.9
MONOCYTES_47
43.9
MONOCYTES_48
43.8
MONOCYTES_49
43.6
MONOCYTES_50
43.5
MONOCYTES_51
43.5
MONOCYTES_52
43.0
MONOCYTES_53
42.8
MONOCYTES_54
42.7
MONOCYTES_55
42.6
MONOCYTES_56
41.8
MONOCYTES_57
41.6
MONOCYTES_58
41.2
MONOCYTES_59
41.1
MONOCYTES_60
41.1
MONOCYTES_61
41.1
MONOCYTES_62
40.9
MONOCYTES_63
40.8
MONOCYTES_64
40.7
MONOCYTES_65
40.7
MONOCYTES_66
40.5
MONOCYTES_67
40.5
MONOCYTES_68
40.3
MONOCYTES_69
39.9
MONOCYTES_70
39.8
MONOCYTES_71
39.8
MONOCYTES_72
39.7
MONOCYTES_73
39.6
MONOCYTES_74
38.9
MONOCYTES_75
38.6
MONOCYTES_76
38.6
MONOCYTES_77
38.4
MONOCYTES_78
38.1
MONOCYTES_79
38.0
MONOCYTES_80
37.9
MONOCYTES_81
37.5
MONOCYTES_82
37.3
MONOCYTES_83
37.0
MONOCYTES_84
36.8
MONOCYTES_85
36.6
MONOCYTES_86
36.3
MONOCYTES_87
35.6
MONOCYTES_88
35.5
MONOCYTES_89
34.9
MONOCYTES_90
34.6
MONOCYTES_91
34.4
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Non-classical monocyte TPM: 62.1
Samples: 90
Max TPM: 82.1
Min TPM: 46.7
M2_1
82.1
M2_2
82.1
M2_3
81.2
M2_4
79.9
M2_5
78.4
M2_6
76.7
M2_7
76.2
M2_8
75.7
M2_9
75.4
M2_10
74.7
M2_11
74.5
M2_12
73.8
M2_13
72.7
M2_14
72.5
M2_15
72.3
M2_16
71.8
M2_17
70.9
M2_18
69.8
M2_19
68.4
M2_20
68.4
M2_21
68.1
M2_22
67.8
M2_23
67.7
M2_24
67.7
M2_25
67.3
M2_26
67.0
M2_27
66.5
M2_28
66.3
M2_29
66.0
M2_30
66.0
M2_31
65.6
M2_32
65.4
M2_33
65.3
M2_34
63.3
M2_35
62.7
M2_36
62.3
M2_37
62.3
M2_38
62.1
M2_39
61.7
M2_40
61.3
M2_41
60.6
M2_42
60.5
M2_43
60.5
M2_44
60.4
M2_45
60.3
M2_46
59.9
M2_47
59.8
M2_48
59.8
M2_49
59.7
M2_50
59.7
M2_51
59.5
M2_52
59.5
M2_53
59.5
M2_54
59.4
M2_55
59.4
M2_56
58.9
M2_57
57.6
M2_58
57.6
M2_59
57.3
M2_60
56.9
M2_61
56.8
M2_62
56.7
M2_63
56.7
M2_64
56.6
M2_65
56.2
M2_66
56.1
M2_67
55.6
M2_68
55.5
M2_69
55.4
M2_70
55.1
M2_71
55.1
M2_72
55.0
M2_73
54.9
M2_74
54.3
M2_75
54.2
M2_76
53.8
M2_77
53.3
M2_78
53.3
M2_79
53.0
M2_80
52.7
M2_81
52.4
M2_82
51.8
M2_83
51.6
M2_84
51.5
M2_85
51.5
M2_86
51.2
M2_87
51.1
M2_88
49.7
M2_89
46.9
M2_90
46.7
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