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EBP
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • EBP
INTERACTION INTERACTION METABOLIC PATHWAYS Show tissue menu
CHOLESTEROL BIOSYNTHESIS 1 (BLOCH PATHWAY) CHOLESTEROL BIOSYNTHESIS 3 (KANDUSTCH-RUSSELL PATHWAY) CHOLESTEROL METABOLISM
Protein interactions
Protein interactions
Methods
Human metabolism
Metabolic proteins
Methods
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

EBP
Synonyms CDPX2, CHO2, CPX, CPXD
Gene descriptioni

Full gene name according to HGNC.

EBP cholestenol delta-isomerase
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Read more
Disease related genes
Enzymes
Human disease related genes
Metabolic proteins
Potential drug targets
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)

HUMAN PROTEIN ATLAS INFORMATIONi

Summary of RNA expression analysis and annotation data generated within the Human Protein Atlas project.

Single cell type
expression clusteri

The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Neurons - Neurotransmission & signaling (mainly)
Single cell type specificityi

The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected.

Cell type enhanced (Adrenal cortex cells, Brain excitatory neurons, Brain inhibitory neurons, Hepatocytes, Loop of henle epithelial cells, Oligodendrocyte progenitor cells, Other brain neurons, Papillary tip epithelial cells, Parietal cells, Proximal tubule cells, Renal collecting duct intercalated cells, Renal collecting duct principal cells)
Tissue expression
cluster (RNA)i

The RNA data was used to cluster genes according to their expression across tissues. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Non-specific - Metabolism (mainly)
Tissue specificity (RNA)i

The RNA specificity category is based on mRNA expression levels in the consensus dataset which is calculated from the RNA expression levels in samples from HPA and GTEX. The categories include: tissue enriched, group enriched, tissue enhanced, low tissue specificity and not detected.

Tissue enhanced (Liver)
Subcellular locationi

Main subcellular location based on data generated in the subcellular section of the Human Protein Atlas.

Localized to the Nuclear membrane, Endoplasmic reticulum
Secretome annotationi

All genes with at least one predicted secreted isoform have been annotated and classified with the aim to determine if the corresponding protein(s) are:

  • secreted into blood
  • locally secreted
  • or actually being attached to membrane or retained in intracellular locations like mitochondria, endoplasmatic reticulum (ER), Golgi apparatus or lysosomes.
Not available
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome X
Cytoband p11.23
Chromosome location (bp) 48521799 - 48528716
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

3
Ensembl ENSG00000147155 (version 109)
Entrez gene 10682
HGNC HGNC:3133
UniProt Q15125
GeneCards EBP
ASSAYSi

Links to data of the different assays available in the Structure & Interaction resource of the Human Protein Atlas. Click on the miniature images to directly get to the respective section.

Interaction Metabolic
INTERACTIONi

In the Interaction part of this page network plots showing the gene's first-level interaction partners according to four different datasets are displayed, including a consensus network plot showing only interactions present in at least two of the datasets. By clicking on nodes the network can be expanded. In the network plots the nodes represent genes and edge color represent the number of datasets the interaction belongs to. In-house generated AlphaFold 3 predicted 3D structures for interactions in the consensus network are displayed by clicking on the blue symbols on the edges.

The highlight bar in the top of the plot can be used to color the nodes according to subcellular location (based on data in the Subcellular section), predicted location (based on signalpeptide and transmembrane region predictions), tissue specificity (based on RNA tissue expression profiles) or proteinclass. For genes categorised as single cell type or group specific the option to highlight interaction partners expressed in the same cell type will also be available in the highlight bar.

Custom highlighting of nodes is possible using the top left Filter option in which a query of choice can be built to for example label all nodes that are tissue enriched in both human and mouse brain or those that belongs to a certain tissue expression cluster. The expression cluster for the gene is stated in the box Human Protein Atlas Information above the network plot. Click on Filter in the top left in the plot to find the query builder and some example queries.

Interactions included are direct interaction and physical associations with high and medium confidence from IntAct, physical multivalidated interactions from BioGRID, interactions with>75% probability from BioPlex and significant physical interactions from OpenCell.

Filter menu »
Fields »
e.g. Brain enriched, Localized to mitochondria, Non-specific - Metabolism

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


Consensus
IntAct
BioGrid
OpenCell
BioPlex
EBP has no defined protein interactions in Consensus.
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 159 View all protein interaction data in IntAct
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ABHD16A346302
AQP60264000
ARL13B21091312
ARL6IP611311810
ARV1111100
BMP10051000
BNIP34491002
BTN2A2033100
C206100
C2CD2L131211
C5117103
C5orf46012000
CCDC167032020
CCL4L2031000
CD4041819035
CD69013000
CD813221960
CDIPT047122
CHODL011000
CLDND2024000
CREB3L14163500
CYB561049000
CYB5B1371310
CYP4F2033000
DEFB103A09000
DEFB103B09000
DEFB127012000
DNAJC3082313038
EHHADH494601
EMC6416606
EMP1055000
ERG28448430
ERGIC371871100
FA2H025108
FAM209A0200000
FAXDC2028000
FETUB06000
FIS1322906
FKBP8213366460
FUNDC21223019
FXYD6044000
GIMAP1040000
GIMAP5053100
GJB2033105
GJB6010001
GOSR2645990
GPR1520164000
GYPA024102
HMOX284415025
HSD17B130104006
IER3IP1034020
INSIG2034800
JAGN11102430
LDLRAD12332048
LEMD1012000
LPCAT2071117
LRP100211016
LRRC5951490130
LTC4S08100
MFSD6031000
MMP142181006
MS4A13052000
NAT8025100
NDUFA3114309
NDUFB112102800
NEU1016309
NINJ1016000
NINJ2063000
NKG7039000
NRM050001
ODF4118100
ORMDL1031011
ORMDL2018011
ORMDL3124100
PLLP033000
PLP2058001
PLPP6045001
PMP22052100
PNLIPRP1031000
PTPN9139300
PVR153400
RNF15215700
RTP2063002
RUSF12494022
SACM1L926152023
SCAMP4016110
SEC22B1546271525
SERP1037300
SERP2042000
SFXN31164028
SFXN528202
SLC30A8066000
SLC35A4023000
SLC35G104000
SLC38A7043001
SLC41A2029000
SLC48A106000
SMAGP035000
SMCO4051000
SMIM1048000
SMIM3044000
SNORC020000
STOM512014221
STX121933364118
STX1B121400
STX5162728190
STX62124371429
STX7253760300
STX81858251627
SYNJ2BP0227026
SYS1014000
TBC1D2004010
THBD019100
TIMM23118201
TLCD107100
TLCD4061101
TMBIM62564012
TMEM100032000
TMEM11240331
TMEM120A122104
TMEM120B147213
TMEM140044000
TMEM1473444113
TMEM14B1193100
TMEM14C035000
TMEM167B028000
TMEM199215626
TMEM203034000
TMEM208018200
TMEM218361300
TMEM222030000
TMEM229B034000
TMEM242030201
TMEM243037000
TMEM254035000
TMEM42041000
TMEM512333010
TMEM60086000
TMEM65029000
TMEM86A038000
TMEM86B092000
TMEM97049100
TSPO2049000
UBE2J13341509
UBIAD1133830
UNC50029000
UNC93B142461022
USE191711620
VAMP2112527613
VAMP32546386223
VAMP4113615130
VAPA74401141400
VAPB453380790
YIF1A566550
YIPF1230202
YIPF4228300
YIPF6472509
ZDHHC24017000
ZFPL135414011
Show allShow less
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 3
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
APP4431314110
RAF13242196140
VKORC1012300
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 1
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
DHCR24318832
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 1
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ACTA12723013
METABOLIC SUMMARYi

In this summary the pathway/subsystems to which the gene belongs is shown together with the associated cellular compartment for the reactions based on metabolite information. The number of proteins and metabolites in the pathway is shown as well as the number of reactions for the selected gene. By clicking on a pathway in the summary table the associated metabolic network map is shown, together with a gene-tissue heatmap that shows the expression of genes in that pathway in different tissues.

Gene EBP is associated with 4 reactions in 3 different subsystems, and present in the compartments: Cytosol, Endoplasmic reticulum. Provided by metabolicatlas.org
Pathway / Subsystem Subsystem-associated compartments # proteins # metabolites # reactions for
this protein
Cholesterol metabolism Cytosol, Peroxisome, Mitochondria, Lysosome, Endoplasmic reticulum, Nucleus 31 66 2
Cholesterol biosynthesis 3 (Kandustch-Russell pathway) Cytosol 9 24 1
Cholesterol biosynthesis 1 (Bloch pathway) Cytosol 19 42 1
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.

Splice variant SwissProt TrEMBL Protein class Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
EBP-202 C9J719
Metabolic proteins
Predicted membrane proteins
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
145 aa
16.6 kDa
No 3
EBP-203 C9JJ78
Metabolic proteins
Predicted membrane proteins
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
160 aa
18.3 kDa
No 3
EBP-205 Q15125
A0A024QYX0
Enzymes
Metabolic proteins
Predicted membrane proteins
Disease related genes
Potential drug targets
Human disease related genes
Mapped to neXtProt
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
230 aa
26.4 kDa
No 5

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