MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:66.8 nTPM
HPA Brain:61.2 nTPM
GTEx:66.8 nTPM
FANTOM5:16.8 Scaled Tags Per Million
Pig:88.0 nTPM
Mouse:54.9 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 61.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.9
1827 Male, age 72, unknown 24.6
2019 Male, age 18, unknown 24.6
2411 Female, age 72, unknown 20.4
2828 Female, age 72, unknown 20.1
1870 Female, age 42, unknown 20.0
1833 Male, age 53, unknown 19.5
2586 Male, age 75, left hemisphere 18.0
1830 Male, age 51, unknown 17.9
2666 Male, age 74, left hemisphere 17.3
2219 Male, age 76, both hemispheres 16.7
Dorsal raphe nucleus
nTPM: 39.9
2298 Female, age 72, unknown 67.1
2016 Female, age 72, unknown 51.0
1828 Male, age 53, unknown 33.0
2047 Male, age 72, unknown 28.5
2750 Male, age 76, both hemispheres 20.1
Inferior colliculus
nTPM: 23.1
2097 Female, age 72, unknown 27.2
2849 Male, age 72, unknown 23.4
1890 Male, age 53, unknown 21.4
1848 Female, age 42, unknown 20.5
Median raphe nucleus
nTPM: 29.6
2220 Male, age 76, midline 29.6
Periaquaductal grey, anterior
nTPM: 32.3
1795 Male, age 51, unknown 38.5
1947 Male, age 18, unknown 30.8
2502 Female, age 75, unknown 27.7
Periaquaductal grey, dorsal
nTPM: 43.3
2850 Male, age 76, both hemispheres 70.1
1840 Male, age 53, unknown 42.5
1831 Male, age 72, unknown 31.7
2464 Female, age 72, unknown 28.9
Periaquaductal grey, lateral
nTPM: 61.2
2272 Male, age 74, both hemispheres 101.2
2140 Male, age 76, both hemispheres 54.6
2053 Male, age 18, unknown 27.7
Pretectal area
nTPM: 34.5
2273 Male, age 74, both hemispheres 89.3
2224 Female, age 72, unknown 46.0
1816 Male, age 51, unknown 30.7
2667 Female, age 75, unknown 30.5
1817 Female, age 42, unknown 30.1
1815 Male, age 53, unknown 29.9
2825 Male, age 18, unknown 28.9
1944 Female, age 72, unknown 27.9
2007 Male, age 72, unknown 26.3
2407 Male, age 75, both hemispheres 21.2
2316 Male, age 76, right hemisphere 19.2
Red nucleus
nTPM: 19.2
2725 Female, age 75, unknown 26.1
2785 Male, age 18, unknown 25.3
2769 Male, age 72, unknown 20.2
2227 Male, age 72, unknown 19.8
2503 Female, age 72, unknown 19.4
1821 Female, age 72, unknown 19.1
1954 Female, age 42, unknown 19.1
1865 Male, age 51, unknown 19.0
1904 Male, age 53, unknown 17.6
2823 Male, age 76, right hemisphere 15.4
2588 Male, age 74, left hemisphere 14.9
2584 Male, age 75, left hemisphere 14.8
Substantia nigra
nTPM: 24.2
1941 Male, age 53, unknown 27.9
1916 Female, age 42, unknown 27.5
2699 Male, age 18, unknown 27.0
2590 Female, age 75, unknown 26.4
1889 Female, age 72, unknown 26.0
1851 Male, age 51, unknown 25.0
2241 Male, age 72, unknown 24.2
2409 Female, age 72, unknown 21.5
2665 Male, age 74, both hemispheres 18.8
2583 Male, age 75, right hemisphere 17.7
Superior colliculus
nTPM: 26.3
2587 Male, age 74, left hemisphere 38.3
1995 Male, age 72, unknown 35.4
2261 Male, age 18, unknown 30.5
2087 Female, age 72, unknown 26.0
2664 Male, age 75, both hemispheres 25.2
1796 Male, age 53, unknown 24.4
1839 Male, age 51, unknown 22.5
1913 Female, age 42, unknown 22.5
2668 Female, age 75, unknown 20.2
1895 Male, age 76, right hemisphere 17.8
Ventral tegmental area
nTPM: 24.8
2021 Male, age 53, unknown 29.3
1915 Female, age 42, unknown 27.1
1942 Male, age 51, unknown 25.2
2218 Male, age 76, both hemispheres 23.6
2223 Female, age 72, unknown 22.8
2410 Female, age 72, unknown 21.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 66.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 66.8
Samples: 183

Max nTPM: 184.7
Min nTPM: 18.4
Std nTPM: 21.3
Median nTPM: 62.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 184.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 142.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 131.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 126.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 120.3
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 119.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 118.3
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 115.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 104.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 103.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 97.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 16.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.8
FF:10158-103A5 76 years, female 16.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 88.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 46.2
Samples: 4

Max nTPM: 57.0
Min nTPM: 41.1
Sample A Female 57.0
Sample B Female 42.1
Sample C Male 44.7
Sample D Male 41.1
Midbrain
nTPM: 56.9
Samples: 4

Max nTPM: 79.2
Min nTPM: 43.0
Sample A Female 79.2
Sample B Female 58.9
Sample C Male 43.0
Sample D Male 46.3
Periaqueductal gray
nTPM: 88.0
Samples: 3

Max nTPM: 102.5
Min nTPM: 70.5
Sample B Female 70.5
Sample C Male 91.0
Sample D Male 102.5
Superior colliculi
nTPM: 55.2
Samples: 4

Max nTPM: 61.7
Min nTPM: 49.8
Sample A Female 61.7
Sample B Female 59.5
Sample C Male 49.8
Sample D Male 49.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 54.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.9
Samples: 4

Max nTPM: 56.5
Min nTPM: 51.3
Sample A Male 55.6
Sample B Male 56.5
Sample C Female 51.3
Sample D Female 56.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69838701 Antisense, RP_050317_04_F04, Mouse strain C57BL/6J (56 days, male) 0.8
77910681 Antisense, RP_070208_04_E11, Mouse strain C57BL/6J (56 days, male) 0.0

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